Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00166 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATCAGAGGTTTCTGCAATGGAAGGTTCTGACAAGTTTTCTCCGAGAACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGACTCGGTTTACCAGGTTCTGAGTCACCGGAGAGAGATGGGGGTGGTGTGGAAGAAAAGAATGGACACCCTTTAGGCATGGTCAAGAATTTGGTGTCTGGGGCCAAAAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGAAAAGAGTGTGGCTTGTTCTCACCAAGGGGTATTGGTGCTAGTGCTGCCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACCATTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCAACTCAGCCTCAGAAGAATGATGATGATGCAGAAGCCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGCACTTACATGGAACTTTCTACAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGATGAGTGAGAGTAGATTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 927 0.4563 MSVPLEQGYVGLSEVSAMEGSDKFSPRTSGGLNLKATELRLGLPGSESPERDGGGVEEKNGHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVGLGKECGLFSPRGIGASAAKAESANQQISVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFGTYMELSTALEKMFSCFTISQCGSHGVSGRDKMSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00166 308 FunFam Auxin-responsive protein 183 300 - -
Viun4g00166 308 SUPERFAMILY CAD & PB1 domains 185 289 - -
Viun4g00166 308 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 295 IPR003311 GO:0005634|GO:0006355
Viun4g00166 308 ProSiteProfiles PB1 domain profile. 188 290 IPR000270 GO:0005515
Viun4g00166 308 Pfam AUX/IAA family 37 299 IPR033389 -
Viun4g00166 308 MobiDBLite consensus disorder prediction 42 63 - -
Viun4g00166 308 Gene3D - 182 301 - -
Viun4g00166 308 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00166 Viun-Chr4 856021 858985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00166 137 298 B3 DNA Binding Superfamily AT4G23980 25.926 8.34e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun4g00166 AUX_IAA 2.3e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00166 K14484 - gmx:100803754 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00166 4 856021 858985 Viun4g00166 4 856021 858985 ECH
Viun3g00290 3 1688297 1690738 Viun4g00166 4 856021 858985 PCT