Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00139 ATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGGAGGACGATATACGTGGCGAATTCCGGCGATTCAAGGGCGGTGATTGCGGAGAGGAGAGGGAAGGATTTTGTGGCCGTTGATTTGTCGATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGGGTGAAGCTCTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAAAACCCTGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACCAGGAGTATTGGTGATTCTATTGCGGAGACTATTGGGGTTGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGAGTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGAATCTACTGGTGCTCAGTCGGCTAGTTATGGTGATGTTTTGCGAAAACCTGTGCCACAAGTCGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCATCGTGTAAGACATGACTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGCTTGGGTTCCTCCCCCTTCAGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCATTGCACGATCATTTTCTCTTCCGAAAACTTACCGATTCTCAGTGTCATGTTCTATTGGATTGCATGCAAAGAGTGGAGGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGAAGGGGACGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCATGTTTTGGAGAGCTTGCTCTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAACGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTCGTGGGATTTTAATGTCAGAATTCTCTAACTTATCATCATTGAAGTTGCTTCGATCTGTAGATCTCCTCTCAAGGTTATCAATTTTACAACTTAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAATAATGAAATCCTTGCATTGTACATCATACAGAAGGGATGCGTAAAAATCACTTTTGACTCTGATTTATTGACGAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAACGAGGAGGATGATGTTCAGAGCAGAACAGAACTATCAATAGAGAAGCCTGAGGGAAGCTATTTTGGTGAATGGACCCTTTATGGTGAACGTATTGGTTCCATAAATGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTGTTAACAAAAGACAAATTTGAATCTGTAATTGGCTCCATACAAAAGATTTCTCAGGAAGATCACAAGTCAAAGGATAATTCCATGGAGTTGACCGGAAGAAATTATGATTTTTCATCCCTTGATAAAGTACAGCTTTCAGATTTGGAGTGGAGAAAGACACTATATTCCACTGACTGTTCCCAAATAGGGGTTGCAAATTTAAAGGAATCAGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTCAAAAGGTTTGGAAAGGAATCACAGGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGGGCTCTTCAGCTAGTATACCACAGGTTTTATGCACTTGTGCTGATCGCATGTATGCTGGAATATTGCTAAATACTCACCTTGCTTGCCCCTTGTCTTCCATACTTTCAAGTCCTTTTGGTGAATCAGCCGCACGGTTTTGTGCTGCATCTGTTGTCACTGCTTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCTCCTGATGTTTTGATGTTGGAGCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGGAAACAGCTATCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCCCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGGGTTTTGATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAACGGAAGCTACACCTTCCGGAGAGTTTCAGCTCTGAAACGGTTGATCTCATCTCCAAGCTACTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTATTGATTGGGAAGGGATTAGAAACCGCACTTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGATTGTAGTACTGGCTATCCGGGCTCGCCTTTGCAGGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 2667 0.4439 MSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKDFVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESTGAQSASYGDVLRKPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQAWVPPPSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKEGDVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTNGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDNNEILALYIIQKGCVKITFDSDLLTSPNAYSLKPDIQNEEDDVQSRTELSIEKPEGSYFGEWTLYGERIGSINAVAVGDVVCALLTKDKFESVIGSIQKISQEDHKSKDNSMELTGRNYDFSSLDKVQLSDLEWRKTLYSTDCSQIGVANLKESENLLTLKRFSKPKVKRFGKESQVLKEKDLIKGLGSSASIPQVLCTCADRMYAGILLNTHLACPLSSILSSPFGESAARFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPESFSSETVDLISKLLEVEENNRLGSQGPDSVKSHPWFNGIDWEGIRNRTFPVPQEIISRITQYLEVHSEDCSTGYPGSPLQEVEELNVPEWLEDW 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00139 888 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 405 554 - -
Viun4g00139 888 SUPERFAMILY PP2C-like 2 197 IPR036457 -
Viun4g00139 888 ProSiteProfiles cAMP/cGMP binding motif profile. 289 398 IPR000595 -
Viun4g00139 888 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 276 847 - -
Viun4g00139 888 SMART serkin_6 584 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00139 888 Pfam Cyclic nucleotide-binding domain 308 399 IPR000595 -
Viun4g00139 888 SUPERFAMILY cAMP-binding domain-like 270 399 IPR018490 -
Viun4g00139 888 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 263 403 - -
Viun4g00139 888 Gene3D Transferase(Phosphotransferase) domain 1 661 846 - -
Viun4g00139 888 CDD CAP_ED 289 398 IPR000595 -
Viun4g00139 888 ProSiteProfiles Protein kinase domain profile. 576 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00139 888 SMART PP2C_4 1 193 IPR001932 -
Viun4g00139 888 ProSiteProfiles PPM-type phosphatase domain profile. 1 195 IPR001932 -
Viun4g00139 888 Pfam Protein phosphatase 2C 2 174 IPR001932 -
Viun4g00139 888 Gene3D Jelly Rolls 405 557 IPR014710 -
Viun4g00139 888 Pfam Protein kinase domain 596 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00139 888 SUPERFAMILY Protein kinase-like (PK-like) 561 861 IPR011009 -
Viun4g00139 888 SMART cnmp_10 415 553 IPR000595 -
Viun4g00139 888 SMART cnmp_10 289 413 IPR000595 -
Viun4g00139 888 PRINTS cAMP-dependent protein kinase signature 325 339 - -
Viun4g00139 888 PRINTS cAMP-dependent protein kinase signature 310 324 - -
Viun4g00139 888 PRINTS cAMP-dependent protein kinase signature 534 546 - -
Viun4g00139 888 PRINTS cAMP-dependent protein kinase signature 360 369 - -
Viun4g00139 888 CDD PP2Cc 2 195 IPR001932 -
Viun4g00139 888 CDD CAP_ED 415 539 IPR000595 -
Viun4g00139 888 Gene3D - 1 196 IPR036457 -
Viun4g00139 888 SUPERFAMILY cAMP-binding domain-like 406 550 IPR018490 -
Viun4g00139 888 Gene3D Phosphorylase Kinase; domain 1 574 660 - -
Viun4g00139 888 Gene3D Jelly Rolls 264 404 IPR014710 -
Viun4g00139 888 ProSiteProfiles cAMP/cGMP binding motif profile. 415 555 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00139 Viun-Chr4 726259 734942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00139 1 888 PP2C-type Phosphatase Gene Family AT2G20050 69.911 0.0 1262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Viun4g00139 Pkinase 7.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00139 - - gmx:100799821 1615.9