Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00136 ATGGTCGACCCAGCACCCTCCTCGGAATCAGAGACAAGAAACGCCGTTGGTTCTGGTTCTGGTTCTGTTTCTTCGCCGTCATCGTCATCGTCCAGTTCCAAGAAACGAGGTAGAAGCAGCGACAACAATGGTAGTAGTAACGACGGCAAGCATTCGGTGTACAGAGGAGTCAGAATGCGGACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTCACCATAAAGGGCTCCTCGGCCATCCTTAACTTCCCCGAACTCGCCGCCTCCCTGCCGCGCCCCGCCTCCAACTCCCCCCGCGACGTGCAGGCCGCCGCCGCCAAGGCCGCCTCCATGGAGGCGCCTCCCCGGACCCCTCCCTCCCCGCCCGCAGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCGCTGGGGTCCAGCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCCTCGACCCGGATGAAGGGTGGCCCTATCCTCACCCGTGGTGCCACGGCATTTATGACGGTGGGTACTTCATCGGTGACATGAACATGAACATGGTTTCAATGCAAGAGTCAGAAAGCATGGTTCTTTCCTTGTGGCCTTGA 678 0.6195 MVDPAPSSESETRNAVGSGSGSVSSPSSSSSSSKKRGRSSDNNGSSNDGKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPRTPPSPPAAPEDDLGEIVELPPLGSSFDSPDPNTEFVFLDPDEGWPYPHPWCHGIYDGGYFIGDMNMNMVSMQESESMVLSLWP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00136 225 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Viun4g00136 225 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Viun4g00136 225 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Viun4g00136 225 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Viun4g00136 225 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Viun4g00136 225 MobiDBLite consensus disorder prediction 117 174 - -
Viun4g00136 225 MobiDBLite consensus disorder prediction 1 55 - -
Viun4g00136 225 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Viun4g00136 225 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Viun4g00136 225 MobiDBLite consensus disorder prediction 7 50 - -
Viun4g00136 225 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Viun4g00136 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 165 - -
Viun4g00136 225 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00136 Viun-Chr4 699794 701345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00136 18 192 AP2-EREBP Transcription Factor Family AT5G11590 54.545 2.39e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g00136 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00136 K09286 - gmx:100804801 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00136 4 699794 701345 Viun4g00136 4 699794 701345 ECH
Viun3g00310 3 1783214 1784885 Viun4g00136 4 699794 701345 PCT