Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00123 ATGGATGAGACTGAGACACAGAAGGTAGAGATGAGAAGAAAAGGAAGAGCTTCCATAGCCATAATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATATTTTGTTGCTGTTTGCAAGCCGTATCATGAACAGCCTAGGTTACAGTAACAACAACCAACAACAAAGTAGTACTAAGACTTACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGACAGGTTCTGAGAATTCGTTACAAGTACTTGGAAGCTGTCCTGAGACAAGAAGTAGGGTTTTTCGATTCTCAAGAAGCAACCACTTCTGAAATCATTAACAGCATATCAAAAGACACTTCTCTCATCCAAGAAGTTCTGAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCTGGGGTTGCGTTTGCCACATATTTTTCTTGGAGATTGGCGTTAGTAGCATTCCCAACGCTGCTTCTTCTGATCATCCCTGGCATGATTTATGGAAAGTATCTAATCTATTTGTCGAAGTCCTCTGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCAGTGAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCAGTGGGAGATATTCAGACATATTGTGTAGAACCTCAAGGCTTGGAATCAAACAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCTTTCATTGCTTGGTATGGAAGCCGTTTGGTTATGTACAAAGGTGAAAGTGGTGGAAGAATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTTGGAGTGGTGCTTCCTGATTTGAAGTACTTCACAGAAGCATCTGTTGCAGCATCAAGAATATTTGACATGATTGATCGAACACCATTAATTGATGGTGAAGACACAAAAGGGCTTGTGTTGGATCACATGAGTGGGAAGGTAGAGTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTCAGTGATTTCAATCTGCAAGTGGAAGCAGGGAAAACGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGCAAATCCACAGCAATAGCATTGATGCAGAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAACCCTAAAATTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCCATGTTTGGAACTTCCATAAAGGAGAATATTATGTTTGGGAAAACAGATGCTACCATGGATGAAATAGTTGCAGCAGCTACAGCAGCCAATGCTCACAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATCGGAGAAAGGGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTCGATCAAGCATCCATGGGGAGAACTACATTGGTTGTTGCACACAAGCTATCGACTATCCGAAATGCAGACCTGATAGCAGTTGTTAGTGGTGGTCGAATCATTGAAACCGGCACACACAATGAACTCATCAACAGACAAAATGGCCACTATGCAAATCTAGCAAAGTTACAGACACAATTGAGCATGGATGACCAAGATCAAAATTCAGAACTAGGTGCTCTTTCAGCACCAAGAAGCAGTGCAGGTAGACCAAGCACAGCAAGGTCAAGTCCTGCCATATTTCCAAAGTCACCATTGCCTGCTGAAGCCACCACCACCCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACCAGACTTCTCTCTCTCAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACCCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCACTATATGCTTTAACCATAGGGGGCATGATTTCTGCCTTTTTTGCCAAAAGCCATCTAGAAATGATGCACAGAATCAGAACTTATTCATTGATTTTCTGTTCTCTTTCCCTTGCCTCCATCACTCTCAATCTCTTGCAACACTACAATTTTGCTTACATGGGAGCCATGTTAACCAAAAGGATAAGGCTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAGTCTCTTGTGGCAGATAGACTCTCTTTACTGGTGCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTCTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTGTTAAGGCACAGAATCAGAGTACACAGATTGCAGTGGAGGCAGTTTATAACCACAGAATTGTGACTTCTTTTGGGAGCATTCCAAAAGTTCTAAGTCTATTTGATGAGGCGCAAGAGGCTCCAAGGAAGGAGGCTAGGAAGAAGTCTTGGCTAGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTAACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTTGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGCTGGTGAGCACGGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTGGCATCTGTGTTTGAAATTCTTGACAGGAAATCACTAATTCCCAAGGCTGGAGATAACGCTAGTGGCATTAAGTTGGAAAAGATGAGTGGTAAGATAGAGTTGAAGAATGTAGATTTTGCTTATCCAAGCAGGGCAGGAACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGGCTGGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATTGGCTTAATCCAAAGATTCTATGATGTGGAGAGAGGTTCAGTAAAAGTGGACAATGTAGACATAAGGGAATTAGACATTCACTGGTACAGACAGCACACAGCACTAGTGAGCCAAGAACCTGTGATATATTCTGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAGGCTGCAAGAGCTGCAAATGCTCATGAGTTCATCTCATCACTGAAAGAAGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGTTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGGAACCCAAAGATACTACTTCTTGATGAGGCAACAAGTGCATTGGATGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTTAACACTATCAAAGAGCTTGATTCAATTGCTTATGTGTGTGAGGGCAAGGTCCTGGAACAAGGAACCTATGCTCAACTTAGGCACATGAGAGGTGCCTTCTTCAACCTTGCCAGCCATCAAATCCAAACTTAG 3723 0.4311 MDETETQKVEMRRKGRASIAIILRYADWIDVVLMLMGALGAIGDGMSTNILLLFASRIMNSLGYSNNNQQQSSTKTYMAEVEKCSLYFVYLGLAVMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSVKTVYSFTAEKRISGRYSDILCRTSRLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRTPLIDGEDTKGLVLDHMSGKVEFEHVKFTYPSRPDMVVLSDFNLQVEAGKTVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKTLKLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAATAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGRIIETGTHNELINRQNGHYANLAKLQTQLSMDDQDQNSELGALSAPRSSAGRPSTARSSPAIFPKSPLPAEATTTPSPVSHPPPSFTRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAMLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSIPKVLSLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNASGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIGLIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKEGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVCEGKVLEQGTYAQLRHMRGAFFNLASHQIQT 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00123 1240 FunFam ABC transporter B family member 4 353 610 - -
Viun4g00123 1240 Gene3D - 990 1240 IPR027417 -
Viun4g00123 1240 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Viun4g00123 1240 SMART AAA_5 1027 1219 IPR003593 GO:0016887
Viun4g00123 1240 SMART AAA_5 390 582 IPR003593 GO:0016887
Viun4g00123 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1237 IPR027417 -
Viun4g00123 1240 Pfam ABC transporter 1021 1167 IPR003439 GO:0005524
Viun4g00123 1240 FunFam Putative ABC transporter B family member 8 643 985 - -
Viun4g00123 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g00123 1240 MobiDBLite consensus disorder prediction 606 659 - -
Viun4g00123 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Viun4g00123 1240 SUPERFAMILY ABC transporter transmembrane region 22 347 IPR036640 GO:0005524|GO:0016020
Viun4g00123 1240 CDD ABC_MTABC3_MDL1_MDL2 1000 1237 - -
Viun4g00123 1240 Gene3D ABC transporter type 1, transmembrane domain 22 903 IPR036640 GO:0005524|GO:0016020
Viun4g00123 1240 PANTHER ABC TRANSPORTER B FAMILY 9 689 IPR039421 -
Viun4g00123 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Viun4g00123 1240 FunFam ABC transporter B family member 1 21 362 - -
Viun4g00123 1240 MobiDBLite consensus disorder prediction 606 636 - -
Viun4g00123 1240 Pfam ABC transporter transmembrane region 37 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g00123 1240 Pfam ABC transporter transmembrane region 677 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g00123 1240 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Viun4g00123 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g00123 1240 SUPERFAMILY ABC transporter transmembrane region 663 977 IPR036640 GO:0005524|GO:0016020
Viun4g00123 1240 FunFam ABC multidrug transporter SitT 990 1238 - -
Viun4g00123 1240 Gene3D - 353 602 IPR027417 -
Viun4g00123 1240 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Viun4g00123 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 601 IPR027417 -
Viun4g00123 1240 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Viun4g00123 1240 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 336 - -
Viun4g00123 1240 Pfam ABC transporter 381 530 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00123 Viun-Chr4 571417 578782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00123 39 601 Calmodulin-binding Proteins AT2G36910 36.300 1.95e-99 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00123 K05658 - gmx:100801088 2216.81