Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00116 ATGTTCTATGCATATATATTCAGTGTTCAGTCCAAGCTTATAGTGAAAAAGTCTTCTTTCTCTTCCTTTGCAATTTCAAAAGCACTACACAATTACATGACAATACCATTTTACTACTATCTAACCATCTTCCTATTCCTGAGCTGTGTACACTCTCAGACTCAGCTGCAAGATCAAGAACATGCAGTGTTACTGCGCATAAAGCAGCACCTACAAAATCCTTCATTCCTCAGTCACTGGACCCCTTCAAACACCCTTCACTGCTTCTGGCCAGAGATAACATGCACCAGTGAATCTGTCACTGGATTAACTCTGTCCAAGAGCAGTATCCATCAAACACTTCCAGATTTCATGTGTGACCTCAAAAATCTCACACATGTTGATTTCAGCTTTAATTCCATTCCGGGGGAGTTCCCAACATTTCTCTATAAATGTTCCAAGCTGGTGTCACTCGACCTTGAAGGGAATGAATTTTCTGGTGCCATTCCTAATGACATAGACAAGTTGGTTAACTTGCAGCATCTTAATCTCGGTTCCACCAGCTTCAGTGGTGACATTCCTGCAAGCATTGGAAGGTTGAAGCAACTGAGATTTCTTCAACTTCACTATTGTCTATTCAATGGCACTTTTCCATCTGAGGGTATTGCCAACTTGTTCAATCTTGAGTTCTTGGACATTTCCTCTAACTTAGTGCTTCCTCCTTCAAAGTTCCCATCAGGCCTGACCCAGTTGAAAAAACTGAAGTTTTTGCACATGTACAGTTGCAACTTCTTCGGGGAAATTCCTGATACCATCGGAGAACTTGTGGCTTTGGAGAACTTGGATTTGTCAAAAAGCAATTTCAGTGGACATATTCCCAAAGGCTTGTTCATGCTCAGGAATTTGAGCATACTCTACCTCTTCAATAACAGTCTCTCCGGGGAGATTCCTGGTGAGATTGAAGCATTGAATTTGGTCGAACTCGATCTTGCACAGAACAATCTCGCAGGGAGAATACCTCAAGATTTTGGGAAGCTCCAAAAGCTAGAATGGTTAAGTTTGTCTCTCAATTACTTGTCAGGGGAGATTCCACAAAGCTTAGGCCTTCTTCCATCTCTCAAATATTTTCATATCATATACAACAAGTTTTCAGGTATTCTTCCTCCTGATTTTGGTCGCTACTCTGAGCTCAAAACATTTCTGGTTGCAAATAATAGTTTCAGTGGAAAACTCCCCGAGAACTTATGCTATCATGGTCAGTTACATAATTTATCTGCTTTTTGTAATCATCTGAGTGGGAACTTACCAGAATCACTTGGCCACTGTAGTAGTTTGACTGATGTAAAAATTTACAGCAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTCTCAACTTGTCAGATTTCATGGTGAGCAATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCTCCAACTATTTCACGCTTGGAGATAAGTCACAACCAGTTTTCTGGTAGGATTCCATCTGGGGTATCTTCATGGACTAACATGGTAGTGTTCAAAGCCAGTGAGAACTACCTCAATGGAAGTGTTCCAAACGAGTTAACAAATCTTCCCAAGTTAACAACTCTATTGCTTGATCACAACCACCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTGGAGAATCTAAATTTGAGCTATAACAAACTCTCTGGACAAATCCCAGATGTGATTGGTGAGTTACATGTACTGAATCAGCTTGACCTGTCAGAAAACCAGTTCTCAGGTCAAGTTCCTTCAGTACTTCCTAGACTCACCAATCTCAACCTATCCTCTAATCATCTCACAGGGAAGGTTCCGAATGAGTTTGAAAACTCTGTCTATTCCACCAGCTTTTTGAACAATCCTGGCCTCTGTGCTGATACACCAGTACTGAACCTAAATCTGTGTGATGTTGGTGCTGGCTTTGAAAAACCAACCAAAGGCTCTTCTTGGCCTCTTGCTTTGATTCCGTGTCTGGTGGCAGTAGCATTCTTGTTGGCTTTGCTGATATCAATCTTGATTGTCAAACTTTTCAGAAGAGGGAAACATGTGTTGGATAACTCATGGAAACTCATTTCCTTTCAAAGGTTGAGTTTCACCGAATCAGACATAGTTTCATCCATGACAGAACACAATGTTATTGGAAGTGGTGGATTTGGCACGGTGTACCGTGTCCCTGTTGATGGTTTAGACTATATTGCTGTGAAAAAGATCTCAAGTAACAGAAAGTTAGACCGAAAGCTAGAGAGCTCATTTCGTGCAGAAGTGAAAATACTGAGCAACATTCGTCATAAGAACATTGTGAAGTTGTTGTGTTGCATCTCTAACGAGGATTCCATGCTCCTTGTGTATGAGTATTTGGAAAACCGTAGCTTAGACAGGTGGCTGCACAATAAGGACAAGTCATCAACTGTGTCAGTTTCAGTTGATCATTTTGTGCTTGATTGGCCAAAGAGATTGAAAATTGCCATTGGGGTTGCTCATGGCTTGTGCTACATGCACCATGATTGCTTCCCACCGATTGTTCATAGAGATGTAAAAACAAGCAACATTCTTTTGGATGCTCAGTTCAATGCAAAAGTAGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGGGATCTTGCTACCATGTCATCTGTTGTTGGTTCATTTGGCTACATGGCTCCAGAATATGTTCAAACAACGCGAGTTAGTGAGAAGATTGATGTGTTCAGCTTTGGAGTGGTACTACTGGAGCTGACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCTTCTCTTGCAGAGTGGGCATGGCGTCACATTATTGTAGGAAGCAAAATAGAAGAGCTGCTGGACAATGATTTCATGGATCCAAGTTACACAAATGAAATGTGCAGTGTTTTCAAAGTTGGGGTGTTGTGCACTTCTACACTTTCTGCTAATAGACCTTCCATGAAAGAGGTGCTACACATGTTGGTCACCATAGGAGAAGGGTTTGCTTTTGGAGAGGGGAATGTTAGGCACTGTGATGGTGTTCCACTTCTTAAGAATTCAAGATGGGAGTGTAGGGTGAATGATGCTATTGATGATGACAGTGATTAG 3120 0.4151 MFYAYIFSVQSKLIVKKSSFSSFAISKALHNYMTIPFYYYLTIFLFLSCVHSQTQLQDQEHAVLLRIKQHLQNPSFLSHWTPSNTLHCFWPEITCTSESVTGLTLSKSSIHQTLPDFMCDLKNLTHVDFSFNSIPGEFPTFLYKCSKLVSLDLEGNEFSGAIPNDIDKLVNLQHLNLGSTSFSGDIPASIGRLKQLRFLQLHYCLFNGTFPSEGIANLFNLEFLDISSNLVLPPSKFPSGLTQLKKLKFLHMYSCNFFGEIPDTIGELVALENLDLSKSNFSGHIPKGLFMLRNLSILYLFNNSLSGEIPGEIEALNLVELDLAQNNLAGRIPQDFGKLQKLEWLSLSLNYLSGEIPQSLGLLPSLKYFHIIYNKFSGILPPDFGRYSELKTFLVANNSFSGKLPENLCYHGQLHNLSAFCNHLSGNLPESLGHCSSLTDVKIYSNEFSGSIPSGLWTLNLSDFMVSNNKFTGELPERLSPTISRLEISHNQFSGRIPSGVSSWTNMVVFKASENYLNGSVPNELTNLPKLTTLLLDHNHLTGPLPSDIISWKSLENLNLSYNKLSGQIPDVIGELHVLNQLDLSENQFSGQVPSVLPRLTNLNLSSNHLTGKVPNEFENSVYSTSFLNNPGLCADTPVLNLNLCDVGAGFEKPTKGSSWPLALIPCLVAVAFLLALLISILIVKLFRRGKHVLDNSWKLISFQRLSFTESDIVSSMTEHNVIGSGGFGTVYRVPVDGLDYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVYEYLENRSLDRWLHNKDKSSTVSVSVDHFVLDWPKRLKIAIGVAHGLCYMHHDCFPPIVHRDVKTSNILLDAQFNAKVADFGLARMLMKPGDLATMSSVVGSFGYMAPEYVQTTRVSEKIDVFSFGVVLLELTTGKEANYGDEHSSLAEWAWRHIIVGSKIEELLDNDFMDPSYTNEMCSVFKVGVLCTSTLSANRPSMKEVLHMLVTIGEGFAFGEGNVRHCDGVPLLKNSRWECRVNDAIDDDSD 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00116 1039 Gene3D Ribonuclease Inhibitor 365 644 IPR032675 -
Viun4g00116 1039 SMART serkin_6 717 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00116 1039 Gene3D Transferase(Phosphotransferase) domain 1 796 1006 - -
Viun4g00116 1039 ProSiteProfiles Protein kinase domain profile. 717 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00116 1039 FunFam Kinase family with leucine-rich repeat domain-containing protein 796 1014 - -
Viun4g00116 1039 Gene3D Ribonuclease Inhibitor 215 364 IPR032675 -
Viun4g00116 1039 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
Viun4g00116 1039 SUPERFAMILY L domain-like 68 380 - -
Viun4g00116 1039 Gene3D Phosphorylase Kinase; domain 1 694 795 - -
Viun4g00116 1039 ProSitePatterns Protein kinases ATP-binding region signature. 723 746 IPR017441 GO:0005524
Viun4g00116 1039 Gene3D Ribonuclease Inhibitor 57 214 IPR032675 -
Viun4g00116 1039 ProSiteProfiles Leucine-rich repeat profile. 554 576 IPR001611 GO:0005515
Viun4g00116 1039 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 214 314 - -
Viun4g00116 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 293 999 - -
Viun4g00116 1039 Pfam Protein kinase domain 719 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00116 1039 FunFam Receptor-like protein kinase HSL1 isoform A 322 645 - -
Viun4g00116 1039 SUPERFAMILY Protein kinase-like (PK-like) 711 999 IPR011009 -
Viun4g00116 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Viun4g00116 1039 SMART LRR_typ_2 169 193 IPR003591 -
Viun4g00116 1039 SMART LRR_typ_2 218 244 IPR003591 -
Viun4g00116 1039 SMART LRR_typ_2 292 316 IPR003591 -
Viun4g00116 1039 SMART LRR_typ_2 597 620 IPR003591 -
Viun4g00116 1039 SMART LRR_typ_2 339 363 IPR003591 -
Viun4g00116 1039 SMART LRR_typ_2 528 552 IPR003591 -
Viun4g00116 1039 FunFam Kinase family with leucine-rich repeat domain-containing protein 699 795 - -
Viun4g00116 1039 Pfam Leucine Rich Repeat 599 620 IPR001611 GO:0005515
Viun4g00116 1039 SUPERFAMILY RNI-like 317 618 - -
Viun4g00116 1039 FunFam Receptor-like protein kinase HSL1 isoform A 57 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00116 Viun-Chr4 526417 529992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00116 54 1002 Receptor kinase-like Gene Family AT5G25930 49.844 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun4g00116 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00116 - - gmx:100819744 1593.56