Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00115 ATGGAACTGTTCATCCCATCATCATTATCATCATCGTATCTGAAACTGTTGTTTCAGTCTCTTGTGATCTTACTTCTGGTTTTTACTCATGCAAACTCCGAGTCTCAATCTCAGCTGCATGATCAAGAACATGCAATCTTACTGAGGATAAAGCAGTACCTTGAAAACCCTTCATATCTCAGTCACTGGACCTCATCAAACTTCTCTCACTGTTCTTGGCCAGAGATAACGTGCAACAACGATGATTCTGTCACTGGCTTAACATTGTCCAACAACAGCATCATTCAAACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCTACAACAATTTAATTCCTGGGGAGTTCCCAATACATCTCCTCAATTGCTCCAAGTTGGAGCACCTAGACCTGGCTATGAACAACTTTGTTGGCAGCATCCCTCGTGACATTGGCAACTTATCGAATCTGCAGTTTCTTAACCTTGGTTACACCAATTTCTCTGGTGACATTCCTTCTACCATTGGAAATCTAAAGGAGCTCACGAATCTTCAACTTCAGAACTGCCTATTCAATGGAACCACCCCCTCTGAGATTGGCAACTTGTCCAATCTTGAGTTCTTGGAGTTGTCATCTAACCCCATGTTTCCTCCTTCGAGGTTGCATGATAACTGGATGCGGTTGAACAAGTTGAAGTATTTTTTCATGTTTGATTGCAACTTGGTCGGGGAGATCCCTGAAACCATTGGAAACATGGTGGCTTTGGAGAGACTTGATCTATCGCAAAACGATTTGAGTGGTGAAATTCCCGGGGGTTTGTTCATGCTGAAGAATCTGAACATAATTTTTCTGTCTAGAAATAATCTTTCTGGGGTGATACCTGATGTGGTTGAAGCACTTAATTTGACCATCATTGACCTATCGCAGAATTCTCTCTCAGGAAAAATACCAGAAGGTTTTGGAAAGCTTCAACATTTAACTGGTTTGGCTTTGTCTATAAATAACTTGCAAGGGGAGATACCACATAGCATTGGCCTTCTTCCATCTCTGATAGATTTTAAAGTGTTTTCCAACAATTTATCAGGTACTCTTCCTCCTGATTTTGGCCGCAACTCAATGCTTAGATCCTTTTTGATTTCAAATAATGGTTTTAGTGGAAAGCTACCCGAGAACTTGTGCTATAATGTTCACTTGGAAAACTTAACTACCTATGAGAATTATCTTAGTGGGGAGTTGCCACAATCACTTGGTAATTGTAGTAGCCTGACAGATCTGAAAATTTATAGTAATGAGTTTTCTGGTAGCATTCCCAGTGGTCTTTGGACTTTAAATTTGTCAACTTTCATGGTGAGTCATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCGAGTATTTCGCGGTTGGAGATAGATTACAATCAGTTTTATGGTAGGATTCCAACTGGGGTGTCTGCATGGACTAATGTGGTTGTGTTTATAGCCAGCAAGAACAACCTTAATGAGAGTATTCCAAGAGAGTTAACAGCACTTCCCAAGCTAACAACACTATTGCTTGATCAGAACCAGCTCACAGGGTCACTTCCCTCAGATATAATATCATGGAAGTCCCTTGGGAATCTGAATTTGCGTCAAAACCAACTCTCTGGACATATTCCTGATTCAATTGGTCATTTACCTAATCTCAACCAGCTTGATCTGTCAGAAAATCAGTTCTCAGGTCAAATTCCTTCTATTCCTACCAGACTCACCAATCTCAATCTTTCCTCCAATTATTTGACTGGGAGGGTTCCAAGTGCATTTGAAAATTCTGCTTTTGAAACCAGCTTTTTGAACAATTCTGGCCTTTGTTCTGATACCCCAGCACTGAATCTCAGATCCTGTAATTATAGCTCTGAAAGTGAAAGCAAGGACTCATCTTGGTCTGTTGCTTTGATCATAAGTCTGGTGGTAGTGGCCTGTTTTCTGGCTCTGTTGGCATTATTCTTGAGCATCAGATATTACAGAAAAAGAAAGAGTGGATTGGATAGGTCATGGAAGCTTATTTCTTTCCAAAGGCTGAGTTTCACTGAATCAAACATTGTGTCATCACTCACAGAAAATAACATTATTGGCAGTGGTGGCTATGGTGCAGTGTACCGTGCTGCAGTTGATGATTTAGGCTATGTTGCTGTGAAGAAGATTTGGGACAACAAAAAGATAGACAAGAAGCTTGAGGACTCATTCCACACTGAAGTTAAAATATTGAGCAGCATTCGTCACAGAAACATTGTGAAGTTGATGTGTTGTGTCTCCAAAGAGGATTCTATGCTCCTTGTGTATGAGTATGTGGAAAACCGCAGCCTGGACAGGTGGTTGCACAGGAAGAATAAATCATCATCAGCTGTTTCAGGTTCAGTTCATCATGTTGTTCTTGATTGGCCAAAGAGATTGCATATAGCGACTGGAACTGCACAGGGTTTGAGCTACATGCATCATGATTGTTCACCACCTATTGTTCATCGAGATGTGAAAACAAGCAACATTCTTTTGGATGATCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAGGATCTTGATGAAACCAGGGGAACTTGCCACCATGTCAGCTGTGATTGGATCATTTGGCTATATGGCTCCAGAGTATATACAAACAACTAGAGTCAGTGAAAAGATTGATGTCTTCAGCTTTGGGGTAATCCTATTGGAACTTACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGGCACCATCAATTAGGAAGCAACATAGAAGAGCTGCTAGACAAAGAAGTCATGGAATCCAGTTACTTAGGTGAAATGTGTAAGGTTTTCAAACTAGGTGTTATGTGCACTGCAACACTTCCTTCTACTAGACCATCCATGAAAGAGGTTCTACAAGTTTTGCTTTCTTGTGAGGAATCATTTTCTAAGGGAGAGAGTAATATTAGCCACTGTGATGATGATGTTCCCTTTCTTAAAAATTCAAGAAGAGAGCACAAGTTGGATATTGATAATGATAGCTAG 3060 0.4062 MELFIPSSLSSSYLKLLFQSLVILLLVFTHANSESQSQLHDQEHAILLRIKQYLENPSYLSHWTSSNFSHCSWPEITCNNDDSVTGLTLSNNSIIQTIPSFICDLKNLTHVDFYNNLIPGEFPIHLLNCSKLEHLDLAMNNFVGSIPRDIGNLSNLQFLNLGYTNFSGDIPSTIGNLKELTNLQLQNCLFNGTTPSEIGNLSNLEFLELSSNPMFPPSRLHDNWMRLNKLKYFFMFDCNLVGEIPETIGNMVALERLDLSQNDLSGEIPGGLFMLKNLNIIFLSRNNLSGVIPDVVEALNLTIIDLSQNSLSGKIPEGFGKLQHLTGLALSINNLQGEIPHSIGLLPSLIDFKVFSNNLSGTLPPDFGRNSMLRSFLISNNGFSGKLPENLCYNVHLENLTTYENYLSGELPQSLGNCSSLTDLKIYSNEFSGSIPSGLWTLNLSTFMVSHNKFTGELPERLSSSISRLEIDYNQFYGRIPTGVSAWTNVVVFIASKNNLNESIPRELTALPKLTTLLLDQNQLTGSLPSDIISWKSLGNLNLRQNQLSGHIPDSIGHLPNLNQLDLSENQFSGQIPSIPTRLTNLNLSSNYLTGRVPSAFENSAFETSFLNNSGLCSDTPALNLRSCNYSSESESKDSSWSVALIISLVVVACFLALLALFLSIRYYRKRKSGLDRSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRAAVDDLGYVAVKKIWDNKKIDKKLEDSFHTEVKILSSIRHRNIVKLMCCVSKEDSMLLVYEYVENRSLDRWLHRKNKSSSAVSGSVHHVVLDWPKRLHIATGTAQGLSYMHHDCSPPIVHRDVKTSNILLDDQFNAKVADFGLARILMKPGELATMSAVIGSFGYMAPEYIQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHHQLGSNIEELLDKEVMESSYLGEMCKVFKLGVMCTATLPSTRPSMKEVLQVLLSCEESFSKGESNISHCDDDVPFLKNSRREHKLDIDNDS 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00115 1019 FunFam Kinase family with leucine-rich repeat domain-containing protein 777 997 - -
Viun4g00115 1019 SUPERFAMILY RNI-like 298 603 - -
Viun4g00115 1019 Pfam Protein kinase domain 700 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00115 1019 Gene3D Ribonuclease Inhibitor 217 369 IPR032675 -
Viun4g00115 1019 FunFam Receptor-like protein kinase HSL1 isoform A 305 628 - -
Viun4g00115 1019 Gene3D Ribonuclease Inhibitor 370 637 IPR032675 -
Viun4g00115 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Viun4g00115 1019 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Viun4g00115 1019 SUPERFAMILY Protein kinase-like (PK-like) 691 980 IPR011009 -
Viun4g00115 1019 SMART LRR_typ_2 559 586 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 201 227 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 322 346 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 251 275 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 105 129 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 153 177 IPR003591 -
Viun4g00115 1019 SMART LRR_typ_2 511 535 IPR003591 -
Viun4g00115 1019 FunFam Kinase family with leucine-rich repeat domain-containing protein 680 776 - -
Viun4g00115 1019 ProSiteProfiles Protein kinase domain profile. 698 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00115 1019 FunFam Receptor-like protein kinase HSL1 isoform A 40 192 - -
Viun4g00115 1019 SMART serkin_6 698 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00115 1019 CDD STKc_IRAK 704 980 - -
Viun4g00115 1019 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 197 297 - -
Viun4g00115 1019 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Viun4g00115 1019 Gene3D Ribonuclease Inhibitor 39 216 IPR032675 -
Viun4g00115 1019 Pfam Leucine Rich Repeat 300 322 IPR001611 GO:0005515
Viun4g00115 1019 SUPERFAMILY L domain-like 43 298 - -
Viun4g00115 1019 Gene3D Transferase(Phosphotransferase) domain 1 777 1001 - -
Viun4g00115 1019 Gene3D Phosphorylase Kinase; domain 1 675 776 - -
Viun4g00115 1019 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 300 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00115 Viun-Chr4 514858 519090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00115 37 980 Receptor kinase-like Gene Family AT5G25930 50.052 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun4g00115 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00115 - - gmx:100798963 1607.42