Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00114 ATGAACAAATTTACCTCATCATGTGTCAAAATGCCAATCCTCCCTCTTCTCTCCTTCCTCTTTCTGATCTTTGCAAACTCTGAGTCTCACTCTTTGCTGTATGATGAAGAGCATGCTGTCCTATTGAAGATAAAACAATACCTGCAAAATCCACCATTCCTCCATCACTGGATCCCATCAAACTCCTCACATTGCACTTGGCCAGAGATCACATGCATCAATGGCTCAGTCACTTCACTGACCATGTACAACACCAACATCACTCAAAAACTGCCACCTTTCCTATGTGACCTCAAAAACCTCACACATGTAGATTTTCAGTTGAATTACCTTCCTGGGGAGTTCCCTAAATCTCTCTACAACTGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAACCTCTTTGTTGGTGAGATTCCTGAAGACATTCATCACTTGGCTGGCCTGCGTTTTCTTAACCTTGGTGGCAACAACTTCTCTGGTGATATCCCAGCCAGCATAGGGAACTTGAAGGAGCTAAGAAACCTTCAACTTCATCAGTGTCTTTTCAATGGTACTTTCCCGGCTGAAATTGGGAACTTGTCCAACCTTGAGTTGTTGTATCTGTTCTCAAACCACATGCTCCCTCCCTCAAAGTTTCCATCAAGCTTGACCCAGTTGAACAAATTGAAGAGCTTTGATATGCATGGATCCAACTTGGTAGGGGAAATCCCCGAAACCATTGGAAACATGGTGGCGTTGGAGGTATTGGATTTGTCACAAAATGGTTTGAGTGGAGAAATTCCCAAAGGTTTGTTTATGCTGAAAAATCTTAGCGTTCTATATATTTACAAGAACAGCCTCTCTGGGGACATGCCTGGAGTGGTTGAAGCATTCAACTTGACAGAAATTGATCTTTCAGACAATAATCTTAGTGGGAAAATACCAGATGATTTGGGAAAGCTCAGCAAGTTAATATTCTTGTCTTTGGCTACGAACCAATTATCAGGGAAGGTACCAGAAAGCATTGGTCGTCTACCAGCTTTGATAGAATTTCTTGTTTTTGTCAACAATTTATCAGGCACTCTTCCACCAGATTTCGGTCGGATCTCAAAGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCACAGGAAGTTTGCCACAGAACTTGTGCTACCATGGAAGGTTAGATGGTTTAACTGCTTACGACAATAACCTAAGTGGGGTTTTGCCAGAATCTCTAGGAAGTTGCAATAGCCTGCGATATCTGAGGATTGAAAACAATGAACTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTTTGAGTTTATCAACCATTAAAATAAACGAAAACAAGTTCACTGGTCAGCTTCCGGAAAGATTGGCTGAGAATCTTTCAGACATAGGCATAAGTTACAATCAGTTTTCTGGTAGAATTCCACATGGAGTGTCTTCTTCCTGGAAGAATATTGTGTCATTCAATGCCAGTAACAACCTCTTCAATGGTAGTATTCCACCGGAGCTAACATCTCTTCCTCAATTAACAACTCTTCTGCTTGATCATAACCAGTTCACAGGACCACTTCCTTCAGATATAATCTCATGGAAGTCCTTGATAAATCTAAATTTGAGCCACAATCAACTCTCTGGAGAAATCCCTCTTGCAATTGCTCAGTTACCTGCTCTTAATATTTTGGATTTATCAGAGAACAGAATATCTGGTCAAATTCCACATCAACTGGCTCTTACAAGACTCACAAATATGAATTTGTCCTCCAATAATTTGGTAGGAAGGATTCCAAGTGAATTTGAAAATCTTGTGTATGCCAGCAGCTTTTTGAACAATCCTGGTCTCTGTGCTGACACTGCAGTACTAAACCTTATCTTGTGCAATTCCAGGCCTCAAAGGGTTGGAATTGATAGAAGATCTGAAACTCATGTTATAATCTTAAGCCTGGTGGTAGCAGCTTCCTTTCTGGCTTTGTTGTCATTGTTTTTGATGATCAGAGTTTACAGAAAAAGAAAGCAGGAACTGAAAAGGTCATGGAAGCTCACTTCCTTTCAAAGGCTCAGTTTCACAAAAGGAAACATTGTGTCCTCAATGTCAGAACACAATATTATTGGCTGTGGTGGGTATGGTGCAGTATATCGTGTCGCTGTTGGTGATTCAAACTATGTTGCAGTGAAGAAGATCCGCAGTAACAGAAAGTTAGAGGAGAAGCTTGTGAGTTCATTTCTTGCGGAAGTTGAAATTCTGAGCAATATTCGTCATAACAACATTGTGAAGTTGCTATGCTGTGTTTCCAAAGAGGATTCTCTTCTCCTTGTCTACGAGTACCTTGAAAACCTTAGCCTTGATAGATGGCTGCACAACAAAAGTAAGCAAACAGCTCCAGGTTCAGTCCTTGATTGGCCAAAGAGATTACATATAGCCATTGGAGCTGCACAAGGTTTGTGCTATATGCATCATGACTGCTTGCCACCTGTTGTTCATCGCGATGTGAAAACAAGTAACATTCTATTGGACTCTAAATTCAATGCCAAAGTTGCTGATTTTGGTCTAGCCATGATGTTGATGAAGCCAGAAGAACTTGCAACCATGTCAGCTGTGGCCGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGGGTCAATGAGAAGATAGATGTGTATAGCTTTGGAGTAGTCCTATTGGAACTGACAACCGGAAAAGAAGCTAATCATGGAGATGAGTACTCATCTCTGGCAGAGTGGGCGTGGCGCCACATTCAGGTAGGGACAGATGTAGAAGATATTTTGGACAAAGAAATTAAGGAAGCTTGTTACATGGATGAAATCTGCAACATCTTCAAACTTGGGGTCATGTGCACTGCAACACTGCCAGCTAGTAGACCTTCCATGAAGGAAGTTCTGAAAATTTTGCTCACCTGCAACAGTCCACTCAGCATTGGAGACAAGAATGTTGGGTTCTATGATTCTGCTCCACTTCTTAAGAATTCAAAATGGGAAAATCAGGTGGAATATTATACTGATGATGATTGA 3036 0.4124 MNKFTSSCVKMPILPLLSFLFLIFANSESHSLLYDEEHAVLLKIKQYLQNPPFLHHWIPSNSSHCTWPEITCINGSVTSLTMYNTNITQKLPPFLCDLKNLTHVDFQLNYLPGEFPKSLYNCSKLEYLDLSQNLFVGEIPEDIHHLAGLRFLNLGGNNFSGDIPASIGNLKELRNLQLHQCLFNGTFPAEIGNLSNLELLYLFSNHMLPPSKFPSSLTQLNKLKSFDMHGSNLVGEIPETIGNMVALEVLDLSQNGLSGEIPKGLFMLKNLSVLYIYKNSLSGDMPGVVEAFNLTEIDLSDNNLSGKIPDDLGKLSKLIFLSLATNQLSGKVPESIGRLPALIEFLVFVNNLSGTLPPDFGRISKLETFQVASNSFTGSLPQNLCYHGRLDGLTAYDNNLSGVLPESLGSCNSLRYLRIENNELSGNIPSGLWTSLSLSTIKINENKFTGQLPERLAENLSDIGISYNQFSGRIPHGVSSSWKNIVSFNASNNLFNGSIPPELTSLPQLTTLLLDHNQFTGPLPSDIISWKSLINLNLSHNQLSGEIPLAIAQLPALNILDLSENRISGQIPHQLALTRLTNMNLSSNNLVGRIPSEFENLVYASSFLNNPGLCADTAVLNLILCNSRPQRVGIDRRSETHVIILSLVVAASFLALLSLFLMIRVYRKRKQELKRSWKLTSFQRLSFTKGNIVSSMSEHNIIGCGGYGAVYRVAVGDSNYVAVKKIRSNRKLEEKLVSSFLAEVEILSNIRHNNIVKLLCCVSKEDSLLLVYEYLENLSLDRWLHNKSKQTAPGSVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSKFNAKVADFGLAMMLMKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQVGTDVEDILDKEIKEACYMDEICNIFKLGVMCTATLPASRPSMKEVLKILLTCNSPLSIGDKNVGFYDSAPLLKNSKWENQVEYYTDDD 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00114 1011 Gene3D Ribonuclease Inhibitor 291 346 IPR032675 -
Viun4g00114 1011 ProSiteProfiles Protein kinase domain profile. 696 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00114 1011 FunFam Receptor-like protein kinase HSL1 isoform A 34 185 - -
Viun4g00114 1011 Gene3D Ribonuclease Inhibitor 347 621 IPR032675 -
Viun4g00114 1011 SUPERFAMILY Protein kinase-like (PK-like) 689 973 IPR011009 -
Viun4g00114 1011 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Viun4g00114 1011 Pfam Protein kinase domain 698 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00114 1011 SUPERFAMILY RNI-like 292 602 - -
Viun4g00114 1011 FunFam Kinase family with leucine-rich repeat domain-containing protein 775 987 - -
Viun4g00114 1011 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Viun4g00114 1011 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Viun4g00114 1011 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
Viun4g00114 1011 Gene3D Ribonuclease Inhibitor 187 290 IPR032675 -
Viun4g00114 1011 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Viun4g00114 1011 SMART serkin_6 696 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00114 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 241 972 - -
Viun4g00114 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Viun4g00114 1011 FunFam Receptor-like protein kinase HSL1 676 774 - -
Viun4g00114 1011 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Viun4g00114 1011 SUPERFAMILY L domain-like 43 377 - -
Viun4g00114 1011 SMART LRR_typ_2 577 600 IPR003591 -
Viun4g00114 1011 SMART LRR_typ_2 146 170 IPR003591 -
Viun4g00114 1011 SMART LRR_typ_2 315 339 IPR003591 -
Viun4g00114 1011 SMART LRR_typ_2 554 576 IPR003591 -
Viun4g00114 1011 SMART LRR_typ_2 244 268 IPR003591 -
Viun4g00114 1011 SMART LRR_typ_2 506 530 IPR003591 -
Viun4g00114 1011 Gene3D Transferase(Phosphotransferase) domain 1 775 982 - -
Viun4g00114 1011 Gene3D Phosphorylase Kinase; domain 1 666 774 - -
Viun4g00114 1011 FunFam Receptor-like protein kinase HSL1 isoform A 298 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00114 Viun-Chr4 509710 513344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00114 37 972 Receptor kinase-like Gene Family AT5G25930 52.013 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun4g00114 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00114 - - gmx:100785907 1630.15