Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00108 ATGGGGAGAGCCACAAGGTGGATGAAGAGTTTGTTTGGGATTTCAAGAGAGAGAGAGAAGAAACAAAACATCATAGAATCTGGTTTTTCTGAGAGTACTAATAATTCAAGAGTTTTGTGTCACAACCCAGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTACAGTCATTCTACACAGAGAAGGACAAAAACAAGCACGCCATTGCGGTTGCTGCGGCCACCGCAGCTGCGGCTGATGCTGCCGTGGCGGCAGCACAGGCCGCCGTGGCAGTTGTTAGACTCACAAGCCAAGGAAGGGGTGGCACCATGTTTGGCGTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCAGTGTTCAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTAGAGTACGGTCCCACCAATCTCGCAGGCTCATGAGTACGAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCCATGGAGAGGTTTGATGATACTAGGAGTGAGTATGCAGTTCCAATCCACAGTAGACGAGCATCATCGTCTTTTGATGCTACACTTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTAGACACTTTCAGGCCTAAGTCAAGATCAAGAAGGACAATATCAGATTTTGGTGACGAGCCATCACTTCAGGCACTTTCATCTCCCTTCTTTGCAATTTCATATAGAGGTACCCCTACCCCTACCCCTACCCCTACACGTTGGTCCATACCAGATCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGGGAAGAATGTCGGTTCTCTACAGCACAAAGCACTCCACGCTTCACAAATCCTTGTAGTTGTGACTCAGTTGCACCTATGACACCACAAAGTGGGTGTCCTGATGATAACTTGTTTCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCTGAACCTAGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAGTCTAGGAGCAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAGTTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAAACAGACAGAAACTATTTCCATCAGAGAGGGTGGTGA 1320 0.4614 MGRATRWMKSLFGISREREKKQNIIESGFSESTNNSRVLCHNPGTIPPNISQAEAAWLQSFYTEKDKNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGGTMFGVGPEIWAAIKIQAVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQARVRSHQSRRLMSTKNEAFRSQNRARRSMERFDDTRSEYAVPIHSRRASSSFDATLNINNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFFAISYRGTPTPTPTPTRWSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFTNPCSCDSVAPMTPQSGCPDDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPSPRKRLSLNEMMESRSSLSGVRMQRSCSKAQEVISFKNAVMGKLQKSTESVRETDRNYFHQRGW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00108 439 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Viun4g00108 439 MobiDBLite consensus disorder prediction 361 397 - -
Viun4g00108 439 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
Viun4g00108 439 Pfam Protein of unknown function (DUF4005) 315 397 IPR025064 -
Viun4g00108 439 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515
Viun4g00108 439 Pfam IQ calmodulin-binding motif 115 134 IPR000048 GO:0005515
Viun4g00108 439 SMART iq_5 112 134 IPR000048 GO:0005515
Viun4g00108 439 SMART iq_5 135 156 IPR000048 GO:0005515
Viun4g00108 439 ProSiteProfiles IQ motif profile. 161 190 IPR000048 GO:0005515
Viun4g00108 439 ProSiteProfiles IQ motif profile. 116 141 IPR000048 GO:0005515
Viun4g00108 439 MobiDBLite consensus disorder prediction 367 385 - -
Viun4g00108 439 Gene3D - 97 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00108 Viun-Chr4 454797 456921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00108 1 398 IQD Protein Family AT3G16490 50.122 1.80e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00108 - - gmx:100788710 643.269