Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00103 ATGGAAGTTGAACTGTTTCTTGCAAATCTGGTTTTTCTGAGAGTACTAATAATTCAAGAGTTTTGTGTCAACCCAGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTACAGTCATTCTACACAGAGAAGGACAAAAACAAGCACACCATTGCGGTTGCTGCGGCCACTGCAGCTGCGGCTGATGCTGCCGTGGCGGCAGCACAGGCCACCGTAGCAGTTGTTAGACTCACATGCCAAGGAAGGGGTGGCACCATGTTTGGCGTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCAGTGTTCAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTAGAGTACGGTCCCACCAATCTCGCAGGCTCATGAGTACGAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCCATGGAGAGGTTTGATGATACTAGGAGTGAGTATGCAGTTCCAATCCACAGTAGACGAGCATCATCGTCTTTTGATGCTACACTTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTAGACACTTTCAGGCCTAAGTCAAGATCAAGAAGAACAATATCAGATTTTGGTGACGAGCCATCACTTCAGGCACTTTCATCTCCCTTCTTTGCAATTTCATATAGAGGTACCCCTACCCCTACCCCTACCCCTACCCCTACACGTTGGTCCATACCAGATCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGGGAAGAATGTCGGTTCTCTACAGCACAAAGCACTCCACGCTTCACAAATCCTTGTAGTTGTGACTCAGTTGCACCTATGACACCACAAAGTGTGTGTCCTGATGATAACTTGTTTCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCTGAACCTAGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAGTCTAGGAGCAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAGTTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAAACAGACAGAAACTATTTCCATCAGAGAGGGTGGTGA 1272 0.4583 MEVELFLANLVFLRVLIIQEFCVNPGTIPPNISQAEAAWLQSFYTEKDKNKHTIAVAAATAAAADAAVAAAQATVAVVRLTCQGRGGTMFGVGPEIWAAIKIQAVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQARVRSHQSRRLMSTKNEAFRSQNRARRSMERFDDTRSEYAVPIHSRRASSSFDATLNINNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFFAISYRGTPTPTPTPTPTRWSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFTNPCSCDSVAPMTPQSVCPDDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPSPRKRLSLNEMMESRSSLSGVRMQRSCSKAQEVISFKNAVMGKLQKSTESVRETDRNYFHQRGW 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00103 423 ProSiteProfiles IQ motif profile. 98 123 IPR000048 GO:0005515
Viun4g00103 423 ProSiteProfiles IQ motif profile. 143 172 IPR000048 GO:0005515
Viun4g00103 423 SMART iq_5 117 138 IPR000048 GO:0005515
Viun4g00103 423 SMART iq_5 94 116 IPR000048 GO:0005515
Viun4g00103 423 Pfam Protein of unknown function (DUF4005) 299 381 IPR025064 -
Viun4g00103 423 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Viun4g00103 423 Gene3D - 79 121 - -
Viun4g00103 423 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Viun4g00103 423 Pfam IQ calmodulin-binding motif 122 136 IPR000048 GO:0005515
Viun4g00103 423 PANTHER IQ-DOMAIN 5-RELATED 41 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00103 Viun-Chr4 442303 444101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00103 27 382 IQD Protein Family AT3G16490 51.902 8.85e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00103 - - gmx:100788710 590.112