Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00087 ATGGAGAATAGCTGCATTCTAGTCTTTCTCATCTTCATTCTACATTCAGATACAACAAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGAGTAGGTGTTGGTGTAGGTGTTGGTGTTGGTAATGGCGGTGGCAATGGTGGAATGGTTTGGGTTGGAGGAGGGATTAACAGTCCAGAGCCTCCTGGATCTTCAGTGCCAAAGCCAGAAGGAGCTTACACAGCTCTGCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAATATTTTGGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTGTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTGGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTTGTGAAAGAGCTGTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACTAACAGATTCACTGGTTCTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCAGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCACTTCCAGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTCCTCAATAACAACCAATTTGAAGGTGAAATTCCCCAAAACCTAGGTAGCTCCCCAGCCTCAGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCTGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTGAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACAGAGATGCAGGTTCTGGATGTGAGCTTCAACTCACTAATGGGTCATTTGCCAGACACACTGTCATGCCTGCAAGACATAGAAGTTCTGAACTTGGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTAGTGTGCTCTCTGAGAAGCCTTGCAAATCTAACTGTTGCATACAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAGTGTTCTATCATACCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGGTGTAAGTAAGTCTAAGCACATTGATCCCATTTCACCATCTCCTTGA 1266 0.4518 MENSCILVFLIFILHSDTTKAVFSVGGGVGVGVGVGVGVGNGGGNGGMVWVGGGINSPEPPGSSVPKPEGAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNTNRFTGSVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSIIPGGSLSCLRIPTPRPLVCGSMGVSKSKHIDPISPSP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00087 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 60 397 - -
Viun4g00087 421 FunFam Leucine-rich repeat extensin-like protein 1 72 236 - -
Viun4g00087 421 SUPERFAMILY L domain-like 71 355 - -
Viun4g00087 421 PRINTS Leucine-rich repeat signature 169 182 - -
Viun4g00087 421 PRINTS Leucine-rich repeat signature 309 322 - -
Viun4g00087 421 Pfam Leucine rich repeat 145 202 IPR001611 GO:0005515
Viun4g00087 421 Gene3D Ribonuclease Inhibitor 238 360 IPR032675 -
Viun4g00087 421 Gene3D Ribonuclease Inhibitor 71 237 IPR032675 -
Viun4g00087 421 Pfam Leucine rich repeat N-terminal domain 72 106 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00087 Viun-Chr4 344442 346068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00087 66 411 Leucine-rich Repeat extension Gene Families AT3G24480 48.991 7.79e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00087 - - gsj:114407518 732.25