Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00083 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCGGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATTGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCAGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGACACTTCTTCCATAGACCCTCAAAGGCTTACACAACTGGGACAAGAAAGCGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGTCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGCAGAAGAGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATCGCTACTCACAGAGATGAAATGTCCGCTGTTGTTGGTGTCCCTCCAATCACAACTTTCACTCATCACCCTTTGGACATTCACCATCTAAAACCAGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCAACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTTCATGAACGACAGAGAGCACAGCATGTAGTTCATCATCATCATCATCAACAACAACAACATCAACAACATCAACAACATCAACAGCATGCACATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCCACCATTATTTCTCCACCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAACAGCAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCGATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1377 0.4452 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIATHRDEMSAVVGVPPITTFTHHPLDIHHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCEEVHERQRAQHVVHHHHHQQQQHQQHQQHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00083 458 MobiDBLite consensus disorder prediction 215 254 - -
Viun4g00083 458 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Viun4g00083 458 MobiDBLite consensus disorder prediction 336 350 - -
Viun4g00083 458 MobiDBLite consensus disorder prediction 215 246 - -
Viun4g00083 458 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Viun4g00083 458 FunFam NAC domain-containing protein 73 56 212 - -
Viun4g00083 458 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Viun4g00083 458 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 344 IPR044799 GO:0003700
Viun4g00083 458 MobiDBLite consensus disorder prediction 321 350 - -
Viun4g00083 458 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00083 Viun-Chr4 333878 338854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00083 11 455 NAC Transcription Factor Family AT5G56620 52.731 8.11e-141 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g00083 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00083 - - gmx:100795246 793.112