LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00082	ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCGGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATTGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCAGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGACACTTCTTCCATAGACCCTCAAAGGCTTACACAACTGGGACAAGAAAGCGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGTCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGCAGAAGAGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATCGCTACTCACAGAGATGAAATGTCCGCTGTTGTTGGTGTCCCTCCAATCACAACTTTCACTCATCACCCTTTGGACATTCACCATCTAAAACCAGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCAACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTTCATGAACGACAGAGAGCACAGCATGTAGTTCATCATCATCATCATCAACAACAACAACATCAACAACATCAACAACATCAACAGCATGCACATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCCACCATTATTTCTCCACCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAACAGCAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCGATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG	1377	0.4452	MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIATHRDEMSAVVGVPPITTFTHHPLDIHHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCEEVHERQRAQHVVHHHHHQQQQHQQHQQHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG	458

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun4g00082	458	MobiDBLite	consensus disorder prediction	215	254	-	-
Viun4g00082	458	ProSiteProfiles	NAC domain profile.	47	208	IPR003441	GO:0003677\|GO:0006355
Viun4g00082	458	MobiDBLite	consensus disorder prediction	336	350	-	-
Viun4g00082	458	MobiDBLite	consensus disorder prediction	215	246	-	-
Viun4g00082	458	Gene3D	NAC domain	56	212	IPR036093	GO:0003677\|GO:0006355
Viun4g00082	458	FunFam	NAC domain-containing protein 73	56	212	-	-
Viun4g00082	458	SUPERFAMILY	NAC domain	43	208	IPR036093	GO:0003677\|GO:0006355
Viun4g00082	458	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	10	344	IPR044799	GO:0003700
Viun4g00082	458	MobiDBLite	consensus disorder prediction	321	350	-	-
Viun4g00082	458	Pfam	No apical meristem (NAM) protein	48	189	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00082	Viun-Chr4	333878	338854	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00082	11	455	NAC Transcription Factor Family	AT5G56620	52.731	8.11e-141	408

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Viun4g00082		NAM	3e-24	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00082	-		-	gmx:100795246	793.112

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