Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00070 ATGATGCTCGGAGAGCACCATCGAGCGAATCCAACCGTCCACGTCCCACCATGGCCAACCCACGATGATCCAACGGCTGAGATGTACTCTGCTTTCTTATCAAACGACGTCAATGCTGCCGAGTACTCTCCCTACTATCTTCAAGAAGCGTTAACGGCGCTGCAGCGTTATCTCCCCGCTAACGAAACTGATGCTGACTCGGACTCGGAGGCTCAAACCGACGCGCCGGTCGACGCCTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAGGTCCGTCGATGCGCGCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGCGACCCGCGCAAGTTCCACTACTCCGGCGCGGCGTGTCCCGAGTTCCGCAAGGGAAGCTGCAAGAAAGGTGACACGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTGCACCCTGCGCGCTACCGCACGCAGCCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGCTTCTTTGCGCACACCCCTGAGCAGCTGCGCCTGGTGCCGATGCAGAGTCCTCGCAGTTCGGGTGAGTCGTACGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTTCGGCGTTCATGTCGTCTCCGGCGGCTTCTCTTTCTCCGCCGGAGTCTCCGCCCGTGTCCCCTTCTATGAACGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTTGGTAAGATGAAGTCGATGCCTCATAACAGAAACGTTACTGTCGGGTCGCCGGGTTACGGGTCACCACGGGGTTCCGTGCTCCGACCCGGATTCTGTAGTCTTCCCACAACACCAACTCAGCAACCGGGTCGGTCTGGGGTGAACTATTTGGATGTTTGGGAGCAGAGTGTTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGGAGGGGCATAAGGGCGAAGATGTTTGAGAAGCTGAGCAAAGAGAACCCTCTGGAAGGGTCGGGTCAGGGAAGTGGGGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGA 1059 0.5987 MMLGEHHRANPTVHVPPWPTHDDPTAEMYSAFLSNDVNAAEYSPYYLQEALTALQRYLPANETDADSDSEAQTDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGESYDGSPMRQVLQSSAFMSSPAASLSPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVTVGSPGYGSPRGSVLRPGFCSLPTTPTQQPGRSGVNYLDVWEQSVEEEPVMERVESGRGIRAKMFEKLSKENPLEGSGQGSGAPDVGWVSELVK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00070 352 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Viun4g00070 352 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Viun4g00070 352 MobiDBLite consensus disorder prediction 328 352 - -
Viun4g00070 352 PANTHER UNKEMPT FAMILY MEMBER 48 352 IPR045234 -
Viun4g00070 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Viun4g00070 352 Gene3D - 121 195 - -
Viun4g00070 352 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Viun4g00070 352 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Viun4g00070 352 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00070 Viun-Chr4 294269 295742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00070 74 258 C2H2 Transcription Factor Family AT5G12850 50.000 1.03e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun4g00070 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00070 - - gmx:100778184 649.432