Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00068 ATGGGAAGTTCGATTGGGTTCATACTGTTGCTGACACTCTGTGTTGTCCTCATAGCTTTGGTTCAGGCACAACAACAAATAGGCTTTGTAAGCATTGATTGCGGTAGTTCGGAAAATTTGTACACAGATGAGTCAATTAAAATAATGTACACAGGTGATGGATCATATATACAGAGTGGGGTTATTAAGAACATCTCCACTGAGTATAATTACCCAAACAATCCCAATCTGCCACAAGTACTCTCAGATCTCAGAAGTTTTCCCAACGGAGAAAGGAACTGTTATAGTATAGCAGGTTTGAGAAGTGACAGTTTATATCTGATCAGAGCTTACTTCTTGTATGGAAACTATGATGGAGAAAACAAGCCTCCAGAGTTTGATCTCTATGTTGATGTCAATTTCTGGTCAACAGTGAAATTCAGAAATGCCTCGGAGGAACTTGTGCTTGAAATAATCAGTTTGGCACAATCAGATGTGACATATGTTTGCCTTGTGAACAAGGGAACAGGAACTCCTTTTATCTCAGGATTAGAGCTTAGACCAGTTAATAGTTCTGTTTACAACACTGAGTTTGGGGAACCTGCTTCGCTAACACTTTTCAAACGATGGGACATTGGGTCACTCAATGGAAGTGGTAGATACGAGGATGATATTTATGATAGAATCTGGTCCCCTTTCAATTCTTCATCCTGGGATTCTGTCAGCACTTCTGAGCCAATAAATGTCAATGGTGATGGCTTTAGACCACCATTTGAAGTTATTAGGACTGCTGCTAGACCAAAGAATGGCACTGATACTTTGGAGCTTTCTTGGACCCCAGATGATCCAAGTTGGAAATTTTATGTGTACTTGTACTTTGCTGAAGTGGAGCAGCTTGAGAAAAACCAGCTCAGGAAATTCAATATATCTTGGAATGGATCTCCATTGTTTGATTCCATAGTACCTCGCCATTTGTTTGCGACCACCCTTTCTAATTCAAAATCTTTGGTGGCAAATGAACATCGTATTTCCATACGCAAAACAGAAGATTCAACCCTTCCACCTATTCTTAATGCAGTTGAGATTTATGTAGTGAAGCTAGATGCACTTGCAACATTTCAACAAGATGTTGATGCTATGGTGGATATAAAGGAAAGCTATAAAATTCAAAGAAATTGGATGGGTGATCCATGTGAGCCAAAGAATCACTCTTGGGAAGGCTTAACATGCAACTATAGCACTTCAGTTCCTCCCAGAATTATATCTCTGAATATGAGCTCCAGCAGTTTGAGTGGAACAATAACTTCTGCCATTTCCAATCTCTCGTCGCTGGAATCTTTGGATTTACACAACAATAGCTTAACGGGAGCAGTGCCTGAGTTCTTGGAAGAATTGAAATCCCTTAAATATTTGGATTTAAAGGACAATCTATTTTCTGGTTCAGTTCCTGTCACTCTTTTAGAAAGATCAAGGGCTGGGAAACTTACATTGAGGGTGGATGATAAAAATCTTGGTGGCTCAGGAGGGAGTAGTAATAAAACCGTTAAAATTGTGGTTCCCATAGTGGTATCAGTATCAGTTATAGTTATATTGGTTGCTTTCATTATCTTTTGGAAACATAGAAGAAATGAACGATCAGATGAGGAGATCAGTATGCTGAACAAAAGAGGGAAAAATGTAACAACGAAGAACTGGCAATACACGTATTCGGAAGTATTGGAAATCACCAACAACTTTGAAAAGGTCATTGGCAAGGGAGGATTTGGAATTGTGTATAGTGGGCAGATGAGAGATGGCAAAGAAGTTGCGGTTAAGATGCTTTCTCCATCATCATCTCAGGGCCCAAAAGAATTTCAAACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCGTTGGTTATTGTGATGATGATAACAAGATGGCTCTCATATACGAGCACATGGTCAATGGCAGCCTGAAAGATTTTCTCTTTCTCTCTGATGGAAATTCACATTGCTTGAGTTGGGAAAGAAGAATACAGATAGCAATCGATGCCGCTGAGGGGTTGGATTACCTACACCATGGTTGCATGCCACCAATAGTACACAGGGATGTAAAGTCAGCAAACATTCTTTTAAGTCAAGATTTAGAAGCCAAGATAGCAGATTTTGGCCTCTCCAAGGAGTTTAGGAAAGATAACCAAAAACAACAATCTCATGTGATTCATACTGATGCTACAAATGACCAATCTGCAATAATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTAGGGGGGTTGACAGAGAAAAGTGACATCTACAGCTTTGGAATTGTTCTACTTGAATTAATCACAGGTCGCCCTGCAATATTTAAAGGCAACACAATAATGCACATACTTGAGTGGCTAAGACCTGAGCTTGAAAGAGGAGAATTGAATAAAATTTTAGATCCAAGGCTCCAAGGAAAATTTGGTGCAAATTCTGGGTGGAGAGCTTTAGGAATAGCATTGCAATGTTCTGCATCAACCTCCATTCAGAGACCTACAATGAGTGTTGTGATAGCAGAGTTAAAACAGTGTTTGACAATGGAATCTCCTAGTAACACTGAAACATTTGTGCCCCCTCCAAAACAAATCTACACTGAATTCTACAGTTCGTCAGAAGCACATTCTTATGATAGTGAATCTATCACCTATTCTTTCCCAAGATAG 2694 0.3961 MGSSIGFILLLTLCVVLIALVQAQQQIGFVSIDCGSSENLYTDESIKIMYTGDGSYIQSGVIKNISTEYNYPNNPNLPQVLSDLRSFPNGERNCYSIAGLRSDSLYLIRAYFLYGNYDGENKPPEFDLYVDVNFWSTVKFRNASEELVLEIISLAQSDVTYVCLVNKGTGTPFISGLELRPVNSSVYNTEFGEPASLTLFKRWDIGSLNGSGRYEDDIYDRIWSPFNSSSWDSVSTSEPINVNGDGFRPPFEVIRTAARPKNGTDTLELSWTPDDPSWKFYVYLYFAEVEQLEKNQLRKFNISWNGSPLFDSIVPRHLFATTLSNSKSLVANEHRISIRKTEDSTLPPILNAVEIYVVKLDALATFQQDVDAMVDIKESYKIQRNWMGDPCEPKNHSWEGLTCNYSTSVPPRIISLNMSSSSLSGTITSAISNLSSLESLDLHNNSLTGAVPEFLEELKSLKYLDLKDNLFSGSVPVTLLERSRAGKLTLRVDDKNLGGSGGSSNKTVKIVVPIVVSVSVIVILVAFIIFWKHRRNERSDEEISMLNKRGKNVTTKNWQYTYSEVLEITNNFEKVIGKGGFGIVYSGQMRDGKEVAVKMLSPSSSQGPKEFQTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEHMVNGSLKDFLFLSDGNSHCLSWERRIQIAIDAAEGLDYLHHGCMPPIVHRDVKSANILLSQDLEAKIADFGLSKEFRKDNQKQQSHVIHTDATNDQSAIMGTTGYLDPEYYKLGGLTEKSDIYSFGIVLLELITGRPAIFKGNTIMHILEWLRPELERGELNKILDPRLQGKFGANSGWRALGIALQCSASTSIQRPTMSVVIAELKQCLTMESPSNTETFVPPPKQIYTEFYSSSEAHSYDSESITYSFPR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00068 897 PANTHER OS07G0107800 PROTEIN-RELATED 30 858 - -
Viun4g00068 897 ProSiteProfiles Protein kinase domain profile. 570 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00068 897 SMART serkin_6 570 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00068 897 SUPERFAMILY Protein kinase-like (PK-like) 554 888 IPR011009 -
Viun4g00068 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Viun4g00068 897 Pfam Malectin-like domain 32 357 IPR024788 -
Viun4g00068 897 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 646 865 - -
Viun4g00068 897 CDD STKc_IRAK 576 853 - -
Viun4g00068 897 SUPERFAMILY L domain-like 395 479 - -
Viun4g00068 897 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
Viun4g00068 897 FunFam Leucine-rich repeat receptor-like kinase 368 498 - -
Viun4g00068 897 Pfam Leucine rich repeat 415 470 IPR001611 GO:0005515
Viun4g00068 897 Gene3D Transferase(Phosphotransferase) domain 1 646 867 - -
Viun4g00068 897 Pfam Protein tyrosine and serine/threonine kinase 572 847 IPR001245 GO:0004672|GO:0006468
Viun4g00068 897 Gene3D Phosphorylase Kinase; domain 1 544 645 - -
Viun4g00068 897 Gene3D Ribonuclease Inhibitor 359 488 IPR032675 -
Viun4g00068 897 FunFam Leucine-rich repeat receptor-like protein kinase 548 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00068 Viun-Chr4 276288 281244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00068 1 858 Receptor kinase-like Gene Family AT4G29180 52.055 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun4g00068 Malectin_like 3.7e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00068 - - gmx:100793137 1451.42