LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00054	ATGGTGGCGTTGGTCAACACAAGATTGAAGAGGGAACAATGCAACCGCACAAAACACGATTCCAGCTTCTCCCATTGGAAGATACTGATTGGGCCTTCTGATTGGGAAGATCATTCCAAAGGAAAGGAAGGGTGTGCAAGATACAGGATCCATAATCTTCCTCAGGAATCAAATCCAGGGGTGTATGAGCTTGGAATTGCTGTGATCAATGGTGGTTTGGGGCGTGAAATTTCCAAGCTTGCCCCTCATTCTCACCGCATAGTGGTGGTTTACCTTGGACAAGCTGATAATGTGAGAACAAGACTCCAACGTTATGGCAGAACAGGTGCTCATCTGCACAGTGGCTGTTCGAATGGTTCTTCTCCCCAAAAGGGGCGCCCCTTGTTTGAGGAAGTGTTTTCACAAGGATTCTCAATCGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCCCTGCGAACAGAAGCTCAGCTGCTCAGTACATTTGATTATGCATGGAACACAAGCAGTAATGGAATCCGTAGACCTGAAGAAATTCTTCAAAAGCTTCAAAAAATTGCTTCAGCCACTAGAACACTTTCAGATGTGGCCAAAGTGCTACTACCATTTACTCAGAAGCAAGTGGGCATCCGAATTAAATCAAGCAAGGCACCTCAGGCAGATGACAAGTTAGATAAAGCGGACAATGAGAGCTATAATTTCCTATCTCGGGTATTCAGTTTTAACAGATCACGTCCTAGGATAGTTCAAAGTGTCACTGGTTTCGTTCAGGAACAGGAGAATGCTAAAATATGTGGAGTGGCATTGGATGATGGTTTGATTTGTCAAAGGCCACCAGCTGAGAAAAGATTGAGGTGTCCCGAACACAAAGGAATGAGAGCTAATGTTTCCATTGCCGAAGCAACCAGGGTTCCCAAGTCAGAGAGCAATATTGATGAAAGTCTGACAGACACCAATGTATGTGGAATCATCTTAAATGATGGCTCTACCTGTAGAAGGCAACCAGTTAAAGGAAGGAAAAGGTGCCATGAGCATAAAGGGAGGAGAGTTGGTGCATTTGTTCAAAATAAAGGCAATGGATACAGATACCAAAATGTCAGCTATGATGTAAAAAATTCTCTACAAACACTGGTAGGGAGTCCTGTTGATGAGAGTATATCAAACACAGATATATGTGGAATCATCTTAAATGATGGCTCTGCTTGTACAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCACAAAGGAAGAAGAATTCATGCATCCTTTCATGTAAATCAGAAATAA	1296	0.429	MVALVNTRLKREQCNRTKHDSSFSHWKILIGPSDWEDHSKGKEGCARYRIHNLPQESNPGVYELGIAVINGGLGREISKLAPHSHRIVVVYLGQADNVRTRLQRYGRTGAHLHSGCSNGSSPQKGRPLFEEVFSQGFSIVYRWAPMQNKEDALRTEAQLLSTFDYAWNTSSNGIRRPEEILQKLQKIASATRTLSDVAKVLLPFTQKQVGIRIKSSKAPQADDKLDKADNESYNFLSRVFSFNRSRPRIVQSVTGFVQEQENAKICGVALDDGLICQRPPAEKRLRCPEHKGMRANVSIAEATRVPKSESNIDESLTDTNVCGIILNDGSTCRRQPVKGRKRCHEHKGRRVGAFVQNKGNGYRYQNVSYDVKNSLQTLVGSPVDESISNTDICGIILNDGSACTRQPVKGRKRCHEHKGRRIHASFHVNQK	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00054	431	SMART	uri_9	70	173	IPR000305	-
	Viun4g00054	431	Pfam	GIY-YIG domain-containing protein	23	181	-	-
	Viun4g00054	431	PANTHER	PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED	370	425	IPR038909	GO:0003677\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00054	3	422	HRT Transcription Factor Family	AT5G56780	41.004	1.28e-105	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HRT	Viun4g00054		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00054	-		-	gmx:100784450	596.66