Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00053 ATGGTAATAGTTGAAATGAGGCAAAAGGATTGTTACAGAAAGAAAGGTTGGGGTGAATTGAGAGGGAAAGTGGTGGTTGTTGCAGTTGAAGCAACCAAAGAACAAGTTTCAAGGAGTGGTTTGATGTGGGCTTTGACTAATGTTGTTCAACCAGGAGATTCTATTAAGCTTCTGGGTGTCATTCCGGTTTTCTGCTCAAACATCAGGGCACTGGGTCTCTCTGGGCTTGCTTTTGCTACAGATTGTATCACTACTCAGTGGAGATCCCGTTTAGGAACTGTCTCAGATCAAAGACAAGTTTTTGTGAATTCATGTTCTCAAATGGTGCTTCAACTTCATCAGTTTTATGATCCAGAGAAGATAAAGATCAGAATCAAAATTCTTTCTGGTTCTTTTTGTGGAGCAGTGGCTGCTGAAGCCAAGAGAGCCAAATCAAGCTGGGTAATATTGGACAGAAAATTGAAAAATGAAAAGAAATACTGCATGGAGGGGCTCAATTGCAGTGTTGTAGTCATGGAGCGATCTGGGCCAAACGTTCTGCGATTGAATTTGATCCTTTCAACAGCTATGGAGCACAATGCATTTCCAAGAAACTTCAAAGGCAAGTCTGAACACGAAGATACAATTAAGGGTCCAATTGTTACTCCTGCAAGTAGTGTAAAACAAGGGTCAAAGACTGCTAGTATCACTGGAACACCATTACCCTTTTCTCAGAACGAGGTGAAAAATCTGGAGGAACCTGTATCCAATTCAGAGAGTGAAATTATTATGAGTTTGTCATCCTGCGGCTCATATTTTCAGCCATGGATTTCAAATGCAATTTGTGCTGATGACGATTTTTCAAAAAACATTAACATCAACCAGGTTCTGGTTTCTCCCACAGAAGCATTGGATCATGAAGCTGTCTTAGGAGTGCTTAATTGTAAAATTGATGTGAACATAAGTAGAAGTGTTAGAGAAGCAATTTCTCTAGGCCCAAATGCCACTACTGCATCTCCTCCATTGTGCTCTATTTGTCAGCATAAGGCACCTTTGTTTGGGAACCCTCCAAGATGGTTTACGTTTGCTGAACTGAAACTTGCCACTGCTGGATTTTCACAGGAAAATTTTTTGGCAGAAAGTGAGGTTGGTTCTGTACACCGTGGAGTCCTATCTGATGGCCAAAATGTTGCTATCAAGCAGTATAAATTAGCTGGTACTCAAGGTGATGAAGAATTTTGGTCAGAAGTTGAGGTCTTAAGCTGCACACAACATCGTAATGTTGTGATGCTGATTGGGTTTTGCATGGAATATGGAAGAAAAATTCTGGTTTATGAATATATCTGCAATGGATCTCTATATTCTCATCTTCATGAAAAGAATGAAAATGTATTGAATTGGTCTGCACGCAAGAAAATTGCTCTGGGAGTAGCTCGTGGGTTGAGGTACCTTCATGAAGAGTGTAGAGTGGGTTGTATTGTGCACAGCGACATTAGACCCTGCAATATCTTCCTTACTCATGACTTTGATGCATTAGTGGGAAATTTTGGGCTTATGAAATGTCATACCAATGGAGAAATAAGGGTTGTGGAAAGCACGGTGATGGGAAGACTCGGGTATTTGGCTCCAGAATATACTGAAAATGGTGAAATCACTGAAAAAACTGATGTTTACTCATTCGGGGTGCTATTACTGGAGCTTCTTACTGGATGCAAAGCTTTGGATAGAAACCAGCAATGCCTCCATGAATGGGGTTTGGTTGAGCGAGGTGACATTGATGAAGTTGTGGACCCAAGAATAAGAAACTGCAGCATTAATGAAGAACTTCGTCGCATGCTGCAATGTTCCATTTTATGCATCCAACACGGTCCTCATTTAAGGCCATCAATGTCTCAGGTACTCCAGATGTTAGAAGGTTATGTTTTGAAAAGTCCAAAAGAATGA 1923 0.4077 MVIVEMRQKDCYRKKGWGELRGKVVVVAVEATKEQVSRSGLMWALTNVVQPGDSIKLLGVIPVFCSNIRALGLSGLAFATDCITTQWRSRLGTVSDQRQVFVNSCSQMVLQLHQFYDPEKIKIRIKILSGSFCGAVAAEAKRAKSSWVILDRKLKNEKKYCMEGLNCSVVVMERSGPNVLRLNLILSTAMEHNAFPRNFKGKSEHEDTIKGPIVTPASSVKQGSKTASITGTPLPFSQNEVKNLEEPVSNSESEIIMSLSSCGSYFQPWISNAICADDDFSKNININQVLVSPTEALDHEAVLGVLNCKIDVNISRSVREAISLGPNATTASPPLCSICQHKAPLFGNPPRWFTFAELKLATAGFSQENFLAESEVGSVHRGVLSDGQNVAIKQYKLAGTQGDEEFWSEVEVLSCTQHRNVVMLIGFCMEYGRKILVYEYICNGSLYSHLHEKNENVLNWSARKKIALGVARGLRYLHEECRVGCIVHSDIRPCNIFLTHDFDALVGNFGLMKCHTNGEIRVVESTVMGRLGYLAPEYTENGEITEKTDVYSFGVLLLELLTGCKALDRNQQCLHEWGLVERGDIDEVVDPRIRNCSINEELRRMLQCSILCIQHGPHLRPSMSQVLQMLEGYVLKSPKE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00053 640 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 337 440 - -
Viun4g00053 640 SUPERFAMILY Protein kinase-like (PK-like) 345 631 IPR011009 -
Viun4g00053 640 ProSiteProfiles Protein kinase domain profile. 365 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00053 640 PANTHER OS01G0750732 PROTEIN 234 637 - -
Viun4g00053 640 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 441 637 - -
Viun4g00053 640 Gene3D Phosphorylase Kinase; domain 1 335 440 - -
Viun4g00053 640 Gene3D Transferase(Phosphotransferase) domain 1 441 639 - -
Viun4g00053 640 ProSitePatterns Tyrosine protein kinases specific active-site signature. 486 498 IPR008266 GO:0004672|GO:0006468
Viun4g00053 640 Pfam Protein tyrosine and serine/threonine kinase 368 630 IPR001245 GO:0004672|GO:0006468
Viun4g00053 640 CDD STKc_IRAK 371 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00053 Viun-Chr4 225983 229328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00053 352 631 Trihelix Transcription Factor Family AT5G38560 43.643 4.83e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun4g00053 PK_Tyr_Ser-Thr 4.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00053 - - vun:114182477 1290.79