Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00049 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCCAGGACATGTTCTTCTTTCAGAGCAACTTTTGTAGGAGTTCGTCTCTTTGGGGTTCAACTACACATATCAAACTCTTCTTCTCTTACCATCAAGAAAAGCTTCAGCATGGATTCCTTGCCCTTGTTATCCTCTCCATCTTCCTCCTTTTCTTCATCAAGAATATCTATTGATGACCATCTATCAGATTCCGATGGCCTCATTGTTCGACCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGACTGGAGAAGCTGGGAAAAGGTGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGGCTTGCAACCTTGAACAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTGGAAGCTCTAACTCTAAGTCAGGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAAGCACAAGAAACCAAACAGAAAGACAGTGATGATTGTTGTGAAGATGAAGCAGGTGCAGATCATGAAGCTGTTATGTGGCTTCATCCTCAGATGAAATCTTCATCGAACAATAGTATTGCAGCAATTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGAAAGGCTAAGACCATGGAACAAACTAAATCAACCCCTGGTTCCTTCCTTCTTGGCCCAATTAGCGTCACTTAA 768 0.4219 MGRKCSHCGNIGHNSRTCSSFRATFVGVRLFGVQLHISNSSSLTIKKSFSMDSLPLLSSPSSSFSSSRISIDDHLSDSDGLIVRPQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNSKSGEIENDVTLSLLQAQETKQKDSDDCCEDEAGADHEAVMWLHPQMKSSSNNSIAAIPDLELTLSVSKGKAKTMEQTKSTPGSFLLGPISVT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00049 255 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Viun4g00049 255 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Viun4g00049 255 CDD SANT 93 138 IPR001005 -
Viun4g00049 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Viun4g00049 255 Gene3D - 92 144 - -
Viun4g00049 255 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Viun4g00049 255 PANTHER TRANSCRIPTION FACTOR KUA1 3 205 - -
Viun4g00049 255 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Viun4g00049 255 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
Viun4g00049 255 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Viun4g00049 255 SMART sant 90 140 IPR001005 -
Viun4g00049 255 FunFam transcription factor MYB1R1 92 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00049 Viun-Chr4 216207 217710 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun4g00049 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00049 - - pvu:PHAVU_004G171200g 406.757