Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00020 ATGAAGACGCATCCACCACCGCAGCCCGACGGTGGCTCCGCCGCTCCCAATCCCAATCCCAATCCTTCCCAAGAGAAGAAGAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTTAATCTTCCTCCCTCTGCCACACACGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTCTCAAGAAAGATGTCGACGCTCAAATTCCCAACTATCCCAATCTCCCTTCCAAGTTACTCTGTCTCCTTCACAGTCTCACTCTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACGCTTCAACCAGTCCCTTCTTTCGATAAGGATGCTCTGTTGAGATCAGATCTTGCTCTCAAGTCCACCAAGCCACAACCCGACTTCTTCTGTAAACAGCTCACCGCAAGTGATACCAGCACTCACGGAGGTTTCTCAGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCTCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGGCACTTGCTTACCACTGGGTGGAGTCTATTTGTCAGCGGAAAGAGGCTTTTTGCCGGGGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCGCCAATATATCTTCGTCAGTACTATCCAGTGACAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCCGCAAACAATAGTCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTGGCCAAGTACTACAAGTCGGTGTACAGTCACCAACCGTCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACGAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAACTCTCAATGGAGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCTATCTGGGAAATCGAACCAGTAACTGCTCCATTTTTCCTCTGCCCGCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGACTTATCTGATTTTGATAACATTTTCAAGAGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATGCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAGTGGATGAACGTGCAGCAAAATCCTACACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCCTTACCGGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCCGCTCCGCAAATTTCTCAGTCAAACAATGTAGCCTTCAATACTCACAGACTACTTCAGACTGCTCAACAGCTGGATCAACTTCAGAAGCTACCATCTACATCTAGCACATTAGGAGCAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATACCACAGAGTCAAGTTCAAGCCCAGCTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAGCAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAAAATCCATCACAGCAGCAGACGATTATAAGTCAGGGTCAACAACAAAATTTGATCCAGTCCCCTATCCCTGATCATGTTCAACAATTACAGATGTCTGACAATCAGATTCAGTTGCACTTGTTACAGAAGCTTCAACAACAAAAACAAACGCACTTGGTACAGCAAACAGTGTTGCAGCAGCCTACTCAGCTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCACTAACACCTGGTCAAGTTCTAGAAATTCCTCCTATGCTTCAAAATTCACTGCCTGAGGCTAATTCTATTTCTAATCAGATCACAAAGGCTAATTTCCAGAACAGTATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAGTGTCTGGCCACATGGGACTTCTTCCTACCCCTACTACAAATAACCAACTTTCTGCTGCTGGTAGTAGTATACTGAATGGAGCAACTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCATCTTGCTCCACCTCACCTTCTGCAAATAACTGTGCCAGTGCACTTCCGCCATTGATAAATTCTCGACTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAATCGAAGTCTGATGTTAAACCTTCTCTGAATATTTCGAAAAGTCAAAATCAAGGGCATTTTGGCCTTCAGTCATACTTGAATGGTAGTGCTGTCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCACATATGCATCAGAATAATAATCCATTAGCTTACAATCCACATTCTATGTTGTTCAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAACTTCTCTTCAGAAGCCCTACTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCGCAGTCATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTTTTGAACAGGGGTACATGGGCTCCACCACCAGCACCGCCTCCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACTAGGTATTCAGGTTATGAAGAGCTTAAACAGGATCTAGCTCGCAGATTTGGAATAGAGGGACAGCTGGAGGATCGGCAAAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGCGGCCTTCCAAATCAAGCGTGTAGCAGCTCTGACGGTGGGAATACCTAA 3360 0.4551 MKTHPPPQPDGGSAAPNPNPNPSQEKKSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHSLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDDLSDFDNIFKRTMPWLGDDMCMKDAQGLPGLSLAQWMNVQQNPTLASSLQPNFAPSLPGSILQNIPGADISRQLGFSAPQISQSNNVAFNTHRLLQTAQQLDQLQKLPSTSSTLGAVLPPQQQLGDITQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQNHQMHRSLSQNPSQQQTIISQGQQQNLIQSPIPDHVQQLQMSDNQIQLHLLQKLQQQKQTHLVQQTVLQQPTQLTQIQDQQRQILDKTHNLSRALTPGQVLEIPPMLQNSLPEANSISNQITKANFQNSIQFPQQPKLQQQQPGLLSEVSGHMGLLPTPTTNNQLSAAGSSILNGATGAGQSVITDDIPSCSTSPSANNCASALPPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDLQSKSDVKPSLNISKSQNQGHFGLQSYLNGSAVHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHSMLFRDNSQDGEVQADARGNIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEALLGNYENNRDAQQELSSSMVSQSFGVPDMAFNSIDSTIDDSSFLNRGTWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00020 1119 FunFam Auxin response factor 300 371 - -
Viun4g00020 1119 Pfam AUX/IAA family 1006 1092 IPR033389 -
Viun4g00020 1119 CDD B3_DNA 135 227 IPR003340 GO:0003677
Viun4g00020 1119 Gene3D - 1002 1096 - -
Viun4g00020 1119 MobiDBLite consensus disorder prediction 980 1000 - -
Viun4g00020 1119 FunFam Auxin response factor 134 238 - -
Viun4g00020 1119 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Viun4g00020 1119 FunFam Auxin response factor 1002 1096 - -
Viun4g00020 1119 SUPERFAMILY DNA-binding pseudobarrel domain 126 265 IPR015300 -
Viun4g00020 1119 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun4g00020 1119 ProSiteProfiles PB1 domain profile. 1007 1091 IPR000270 GO:0005515
Viun4g00020 1119 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Viun4g00020 1119 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun4g00020 1119 MobiDBLite consensus disorder prediction 1 16 - -
Viun4g00020 1119 SUPERFAMILY CAD & PB1 domains 1020 1085 - -
Viun4g00020 1119 SMART B3_2 136 238 IPR003340 GO:0003677
Viun4g00020 1119 MobiDBLite consensus disorder prediction 1 28 - -
Viun4g00020 1119 Gene3D - 134 237 IPR015300 -
Viun4g00020 1119 Gene3D - 300 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00020 Viun-Chr4 125525 131587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00020 25 479 B3 DNA Binding Superfamily AT1G19220 72.926 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun4g00020 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00020 - - ccaj:109803454 1895.94