Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00018 ATGGCACTCCCTACTTCTTTGACTCCATTCACATTTCTCCTTTCATCTTCATTTTTATCGCATATTCTCCTCATCGTAGCTGTTTCCGACAAAGAATTGCTCCTCGGATTCAAAGACTCTATCGAAAACAAAGATGTATTGTCTTCCTGGAATGAATCCGTCCCTCCATGTTCTCCCAAACAAAACAACTGGCCTTACGTTCAGTGTTATAAGGGACACGTCTGGGGGTTGACGCTCGAGAACATGAGACTCAAAGGGGTCGTTGACGTTCAAACCCTCGTCAAACTACCCTATCTCCGAACCTTAAGCCTCAAGAACAATGATTTTAACACTGAATGGCCTTACATCAACGGCATGCAGGGTTTGAAGGCCCTTTTTCTTTCCAATAACAAGTTCTTTGGGGAGGTTCCTGCTCAGGCTTTTCAGGACATGAAATGGTTAAAGAAAATCCATTTGTCCAACAACCGCTTCACCGGTCATATTCCAACTTCCCTCACATCCATGCGCAGGCTTATGGAGTTGAAGCTCGACGGAAACCAATTCTCCGGCTCCATTCCCAATTTCCTACGTCCATTGAAATCTTTTACTGTATCTGATAACAAATTAGAGGGAGAAATCCCAGAAGGCCTCCGTGACATGCCAGCTTCAGCTTTCTCTGGTAATGAAGGGCTATGTGGAGCACCATTAGAATCATGCCACTCCAAAAAGCAATCACCTTTGAGTATTATTGTGACTGTGGTTCTTGTTGTTGTAGCTCTGCTTGTTATTGGAGCAGTAGTATTGCTAGTCCTTCGTCGGAGAAGAGAGCAGGTGCCAGACCCGGATCCAGATCCAGATCCAGGTGTGCCTGAGGAAAATCCACCATCAATGATCCACAAGAAAGCACGAAGCAGGGAACCATCAGAGGAAGGAAGTCACAGGTCCCGCGCCTCGAGCCGCGTCAGCAAAAGAGACAACCTGATGTTATCGTTTGTGAGGGATAACCAAGAGCAGTTTGATTTGCATGAACTACTGAGAGCCTCAGCTCAGATACTGGGTAGTGGTTGTTACAGCTCTTCCTACAAGGCTTCTTTGTTAGATGGACCAGTGATGGTGGTCAAGAGATTCAAGCAAATGAACAATGTGGGAAGGGAAGAGTTTCAGGAGCACATGCGACGGCTTGGACGCTTAAACCATCCTAATCTGCTTCCTCTCGTTGCCTACTACTACAGAAAGGAGGAGAAACTCTTCGTTACTAACTATGTTCACAATGGCAGCTTGGCTATTCGCCTCCACGGATACCAAGCTCTAGGGCAGCAAAGCCTGGATTGGGAGAGTAGGTTGAAGATAGTGAAAGGCATAGCAGAAGGACTTCAATATCTTTACACGGATATGCCAAGTTTAATTGCGGCGCATGGACATCTGAAGTCCTCCAACGTGCTTCTGAATGAATCTTTGGAGCCCCTTCTGATGGACTATGGGTTGGTACCAGTGATAAACCAAGACCTTGCTCCTGAAATAATGGTGATCTACAAATCCCCAGAGTATTTGCAGCATGGTCGCATTACAAAGAAGACTGATGTGTGGAGTCTTGGGATAATCATCTTGGAGATTCTAACGGGAAATCTTCCTGCTAACTTTCTACAAGGTACAGGAAGCGAGTTGAGTATGGCAAACTGGGTCCATTCGGTTGTGAGGGAAGAGTATAGTGAGGTGTTTGATAAGGATATGGAGGTAACAAAAAACAGTGAGGGAGAGATGATAAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAGGGGATGTTGACAAGAGATGGGACTTAAAAGAAGTTGTAGATAGAATTCATCAAGTAAAGGAAACTGATAACGAGGATCACAATTCCCGTTCTTCTTCTTCTAATGCTAGTGAAGTTCAAGTCAAGCAGACTCAGTCAGGTGAAGTTAGTTTCTCCATAGATGGTTGA 1944 0.4496 MALPTSLTPFTFLLSSSFLSHILLIVAVSDKELLLGFKDSIENKDVLSSWNESVPPCSPKQNNWPYVQCYKGHVWGLTLENMRLKGVVDVQTLVKLPYLRTLSLKNNDFNTEWPYINGMQGLKALFLSNNKFFGEVPAQAFQDMKWLKKIHLSNNRFTGHIPTSLTSMRRLMELKLDGNQFSGSIPNFLRPLKSFTVSDNKLEGEIPEGLRDMPASAFSGNEGLCGAPLESCHSKKQSPLSIIVTVVLVVVALLVIGAVVLLVLRRRREQVPDPDPDPDPGVPEENPPSMIHKKARSREPSEEGSHRSRASSRVSKRDNLMLSFVRDNQEQFDLHELLRASAQILGSGCYSSSYKASLLDGPVMVVKRFKQMNNVGREEFQEHMRRLGRLNHPNLLPLVAYYYRKEEKLFVTNYVHNGSLAIRLHGYQALGQQSLDWESRLKIVKGIAEGLQYLYTDMPSLIAAHGHLKSSNVLLNESLEPLLMDYGLVPVINQDLAPEIMVIYKSPEYLQHGRITKKTDVWSLGIIILEILTGNLPANFLQGTGSELSMANWVHSVVREEYSEVFDKDMEVTKNSEGEMIKLLKIALACCEGDVDKRWDLKEVVDRIHQVKETDNEDHNSRSSSSNASEVQVKQTQSGEVSFSIDG 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00018 647 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 90 185 - -
Viun4g00018 647 Gene3D Ribonuclease Inhibitor 143 232 IPR032675 -
Viun4g00018 647 MobiDBLite consensus disorder prediction 270 314 - -
Viun4g00018 647 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Viun4g00018 647 FunFam pollen receptor-like kinase 1 307 414 - -
Viun4g00018 647 Gene3D Ribonuclease Inhibitor 29 142 IPR032675 -
Viun4g00018 647 MobiDBLite consensus disorder prediction 621 647 - -
Viun4g00018 647 SUPERFAMILY L domain-like 30 213 - -
Viun4g00018 647 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Viun4g00018 647 SUPERFAMILY Protein kinase-like (PK-like) 343 610 IPR011009 -
Viun4g00018 647 Gene3D Phosphorylase Kinase; domain 1 305 414 - -
Viun4g00018 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 618 IPR046959 -
Viun4g00018 647 MobiDBLite consensus disorder prediction 612 647 - -
Viun4g00018 647 ProSiteProfiles Protein kinase domain profile. 339 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00018 647 Pfam Protein kinase domain 342 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00018 647 Gene3D Transferase(Phosphotransferase) domain 1 415 637 - -
Viun4g00018 647 MobiDBLite consensus disorder prediction 289 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00018 Viun-Chr4 114897 117717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00018 27 644 Receptor kinase-like Gene Family AT5G35390 47.450 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun4g00018 Pkinase 1.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00018 - - gmx:100785189 811.601