Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00008 ATGCTGGAAGGTGGTGGTGCGAAATTCCCGGGAATAATAGACCTCAACAAACAGAACGACGACTACTATGATTTCTCTAAGGGCTTTTATCATAAGCTTGAGGAGGGCACGGATATGTTAATCGACAGCATTGGGAGCTTGCAAACAAGTAACGGTGGAGGATCTGTTGCAATGTCCATTGATAATAGCAGTGTTGGCTCCAATGATTCCCATACTCGTATATTGAACCACCAAGGGTTGCGGAGACGCGCCAATGATAATTACTCCATTGCACACAGTGTCAATCATCGAGGAAGAGTTACACATGCTTTGAGTGATGATGCTTTGGCTCAAGCACTAATGGACAGTAGTTCCCCAACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGAGCTTTCGGGAAACTCTACAGAGGTACTTACAATAATGAAGATGTTGCCATTAAAATCTTAGAGAGGCCTGAAAATGATTCGGCAAAGGCTCAGTTGATGGAACAGCAGTTTCAGCAGGAGGTGATGATGCTGGCTACACTAAATCATCCTAACATAGTTCGTTTTATTGGTGCATGCCATAAGCCAATGGTATGGTGTATTGTTACAGAATATGCAAAAGGCGGTTCAGTTCGGCAATTTTTAATGAAGCGACAAAACCGATCAGTGCCCCTTAAATTGGCTGTTAAACAAGCTTTGGATGTTGCACGTGGGATGGCATATGTTCATGGCCTTGGGTTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTAGTGACAAATCAATTAAAATTGCTGATTTTGGAGTTGCTCGGATTGAGGTACTAACGGAAGGAATGACACCTGAGACGGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTTTATGGGAACTCATCACTGGAATGCTTCCATTTCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTCACCAAAAACGTTCGCCCTATCATACCCAATGACTGCTTACCTGTTCTCCGCGAGATCATGACAAGATGCTGGGATCCCAACCCTGATATTAGGCCACCGTTTACTGAAATTGTAGGAATGCTTGAGAACGCAGAGACTGAGATCTTGACAACTGTTCGGAAAGCCCGATTTAGGTGTTGCATGACACAACCGATGACTACTGACTGA 1254 0.4378 MLEGGGAKFPGIIDLNKQNDDYYDFSKGFYHKLEEGTDMLIDSIGSLQTSNGGGSVAMSIDNSSVGSNDSHTRILNHQGLRRRANDNYSIAHSVNHRGRVTHALSDDALAQALMDSSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKILERPENDSAKAQLMEQQFQQEVMMLATLNHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFSDKSIKIADFGVARIEVLTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVTKNVRPIIPNDCLPVLREIMTRCWDPNPDIRPPFTEIVGMLENAETEILTTVRKARFRCCMTQPMTTD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00008 417 Gene3D Transferase(Phosphotransferase) domain 1 219 413 - -
Viun4g00008 417 FunFam Serine/threonine-protein kinase isoform 1 126 218 - -
Viun4g00008 417 ProSiteProfiles Protein kinase domain profile. 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00008 417 Gene3D Phosphorylase Kinase; domain 1 125 218 - -
Viun4g00008 417 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 86 393 - -
Viun4g00008 417 SUPERFAMILY Protein kinase-like (PK-like) 118 390 IPR011009 -
Viun4g00008 417 SMART serkin_6 136 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00008 417 CDD STKc_MAP3K-like 143 390 - -
Viun4g00008 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Viun4g00008 417 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 PRINTS Tyrosine kinase catalytic domain signature 214 227 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 PRINTS Tyrosine kinase catalytic domain signature 252 270 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 PRINTS Tyrosine kinase catalytic domain signature 298 308 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 PRINTS Tyrosine kinase catalytic domain signature 361 383 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 Pfam Protein tyrosine and serine/threonine kinase 137 389 IPR001245 GO:0004672|GO:0006468
Viun4g00008 417 FunFam serine/threonine-protein kinase HT1 219 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00008 Viun-Chr4 48110 51880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00008 1 417 MAP Kinase Kinase Kinase AT2G24360 73.861 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun4g00008 PK_Tyr_Ser-Thr 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00008 - - gmx:100788536 782.326