Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06176 ATGGAACAGCTTGAGGCATCGATGTATGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGTAGTAGATCAAAGTGAAGTGACGAGCCCTGATGATCCTTTGACTGAATCTCCAAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCCGATGATTGTCTGCCTCCATTGGATATGTCACAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTAGGTGTTCTGGCCACTGCATCTCATGCCATTGCAACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAACAAGTATCTGGAAGCTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAATCCCCGAAAGAAGGTTCAGTGGCACAATTGTAGGTGTTGGAGATAATAAATCATCGGTATGGCCTGATTCCGATTGGCGATCCTTAAAGGTACAATGGGACGAACCATCGTCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTCTCTACCACTCCTGCAAACCCGCAGCCAACACAAAGAAACAAGAGGGCACGGCCTCTTATTGTACCTTCTACAGTGCCCGATTCTTCTTTGCAAGGCATGTGGAAATCTCCCATTGAATCTACAACTTTCTCTTGTGATCCTCAACATAGACGTGGCCTCTATCCATCGCCTAAGTTCAATCCTTCCGCAACTAACTTTATTGGTTTTAGTGGGAATAGCTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCTTGGAATCAATTTCACCTATAGCCCTTAAAGAAGCTGGAGAGAAGAGACAAGACACTGGAAATGGCTGTAGACTCTTTGGGATTCAGCTACTAGAGAATTCTAAAGCAGAAGGAAGTCTACAAACAGTCAATTTGTCTGGAAGGCTGGGTGATGATAGGTTTGTTCCATCTTTAGATGCTGAATCTGATCAGCAGTCTGAGCCATCAAATGCCAATCGATGTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAACCATGCCTGTCTCCACAGGAGTTGCAAAGCAAGCAAATAAGGAGTTGTACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTTGTGGATACGAGGATCTGCTCAGGAAACTAGAAGAGATGTTTGACATCAAGGCTGAGCTGTGTGGGTCCATACAAAAATGGCAGGTTGTCTACACTGATGATGAAGATGATATGATGATGGTTGGAGACGATCCATGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGGCAGAGGTGGTGAAGAAGCTCTCCCCGAAAATAGGGCTTTCAATGAATGAAAAATTGAAAGCAAACAAGCAGGATTGGGAAGAAATAGTCAATCCCGAGGAGCAGTCGTCTAATGTGGGACCCAGTTGCTAG 1872 0.4396 MEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPVVDQSEVTSPDDPLTESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSVWPDSDWRSLKVQWDEPSSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLIVPSTVPDSSLQGMWKSPIESTTFSCDPQHRRGLYPSPKFNPSATNFIGFSGNSFVGPPSNKSIYWSNRMENSLESISPIALKEAGEKRQDTGNGCRLFGIQLLENSKAEGSLQTVNLSGRLGDDRFVPSLDAESDQQSEPSNANRCDIPSVSCDAEKPCLSPQELQSKQIRSCTKVHMQGMAVGRAVDLTRFCGYEDLLRKLEEMFDIKAELCGSIQKWQVVYTDDEDDMMMVGDDPWDEFCSVVRKIFIYTAEVVKKLSPKIGLSMNEKLKANKQDWEEIVNPEEQSSNVGPSC 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06176 623 FunFam Auxin response factor 494 588 - -
Viun3g06176 623 FunFam Auxin response factor 239 311 - -
Viun3g06176 623 Gene3D - 494 588 - -
Viun3g06176 623 MobiDBLite consensus disorder prediction 459 473 - -
Viun3g06176 623 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 588 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun3g06176 623 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Viun3g06176 623 SUPERFAMILY CAD & PB1 domains 502 576 - -
Viun3g06176 623 CDD B3_DNA 74 176 IPR003340 GO:0003677
Viun3g06176 623 ProSiteProfiles PB1 domain profile. 499 591 IPR000270 GO:0005515
Viun3g06176 623 Gene3D - 73 178 IPR015300 -
Viun3g06176 623 SUPERFAMILY DNA-binding pseudobarrel domain 68 205 IPR015300 -
Viun3g06176 623 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Viun3g06176 623 Pfam Auxin response factor 202 284 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g06176 623 Gene3D - 239 312 - -
Viun3g06176 623 SMART B3_2 76 178 IPR003340 GO:0003677
Viun3g06176 623 MobiDBLite consensus disorder prediction 454 473 - -
Viun3g06176 623 FunFam Auxin response factor 74 178 - -
Viun3g06176 623 Pfam AUX/IAA family 497 578 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06176 Viun-Chr3 65066070 65074616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06176 1 622 B3 DNA Binding Superfamily AT1G59750 68.051 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g06176 AUX_IAA 1.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06176 K14486 - gmx:100815450 1122.84