Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06165 ATGCAAGTCACTAAGGTCGCCAGGGCATTGGCTGCAAAGCCAACTGGAGTTGTTGGGGAGCAAAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACACAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGACGAGGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAATCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGTATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACATCCCTTCTGATTGATTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTGTTGATTATCTTCATCGAGCAGGCCGAACATGTAGAAAGCCCTTTTCTGACATCAATTGTAGTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAACGAGTTGATGTTTGACTGTGAAGAGCTTATTGTTCCATAA 960 0.4156 MQVTKVARALAAKPTGVVGEQKSCSIMALLDGGTLKRHKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTIFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCSVTSIIVPDERFVLQRYENELMFDCEELIVP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06165 319 SMART helicmild6 198 282 IPR001650 -
Viun3g06165 319 Gene3D - 146 316 IPR027417 -
Viun3g06165 319 Gene3D - 1 136 IPR027417 -
Viun3g06165 319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 319 IPR001650 -
Viun3g06165 319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 132 IPR014001 -
Viun3g06165 319 Pfam DEAD/DEAH box helicase 24 116 IPR011545 GO:0003676|GO:0005524
Viun3g06165 319 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 309 - -
Viun3g06165 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 305 IPR027417 -
Viun3g06165 319 Pfam Helicase conserved C-terminal domain 161 280 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06165 Viun-Chr3 64985060 64991089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06165 32 316 Eukaryotic Initiation Factors Gene Family AT5G11170 25.172 1.12e-17 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06165 3 64985060 64991089 Viun3g06165 3 64985060 64991089 ECH