Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06151 ATGATGCAGCCAGGAGGACCCGGCATGGCCCAACAACCCAACCAGCAATATCCCCAACAGCAGCAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCATCGGCCCAGCCTCCTCCACAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTACCTCTACACGTGCTTCGCTCACACAGGCGAGGTGGCTTCAGTTAAAGTCATTAGGAACAAACAAACCAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTACTCGTGCTGGTGCCGAGAGAATCCTTCAAACATACAACGGAACCATCATGCCAAATGGTGGTCAGAACTTCAGATTGAACTGGGCTTCGTTTAGTGCGGGGGACAGGCGTCATGATGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCACGCTATCCCTCGGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTTACTGGTCGTACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAGGGGGTTCTTTGTTCAACAAGACCCATGCGAATTGGACCTGCCTCTAATAAAAACCCTAGCACCCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACCGATGACCATTTGAGGCAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTTCAATTTGCGGACAGGAGCTGTGCAGAAGAGGCTTTGCGGGTTTTAAACGGTACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCGAATCAGTGGAATGGCAGCAGTGGTGGTTACTATGGATATGCTGCGCAGGGTTATGAAAATTATGGTTATGCTCCTGCAGGACAAGACCCCAATATGTATGGCAGTTATCCGGGCTACGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1203 0.4938 MMQPGGPGMAQQPNQQYPQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTTRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06151 400 FunFam Polyadenylate-binding protein RBP45 6 148 - -
Viun3g06151 400 SUPERFAMILY RNA-binding domain, RBD 27 145 IPR035979 GO:0003676
Viun3g06151 400 MobiDBLite consensus disorder prediction 228 263 - -
Viun3g06151 400 FunFam Polyadenylate-binding protein RBP45C 242 371 - -
Viun3g06151 400 SUPERFAMILY RNA-binding domain, RBD 141 244 IPR035979 GO:0003676
Viun3g06151 400 MobiDBLite consensus disorder prediction 1 59 - -
Viun3g06151 400 FunFam Polyadenylate-binding protein RBP45C 149 241 - -
Viun3g06151 400 MobiDBLite consensus disorder prediction 231 263 - -
Viun3g06151 400 SMART rrm1_1 65 140 IPR000504 GO:0003723
Viun3g06151 400 SMART rrm1_1 158 232 IPR000504 GO:0003723
Viun3g06151 400 SMART rrm1_1 265 332 IPR000504 GO:0003723
Viun3g06151 400 CDD RRM1_SECp43_like 65 145 - -
Viun3g06151 400 CDD RRM2_SECp43_like 156 235 - -
Viun3g06151 400 SUPERFAMILY RNA-binding domain, RBD 249 365 IPR035979 GO:0003676
Viun3g06151 400 Gene3D - 149 243 IPR012677 -
Viun3g06151 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Viun3g06151 400 MobiDBLite consensus disorder prediction 380 400 - -
Viun3g06151 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
Viun3g06151 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Viun3g06151 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Viun3g06151 400 MobiDBLite consensus disorder prediction 386 400 - -
Viun3g06151 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 340 - -
Viun3g06151 400 MobiDBLite consensus disorder prediction 8 29 - -
Viun3g06151 400 Gene3D - 244 370 IPR012677 -
Viun3g06151 400 Gene3D - 7 148 IPR012677 -
Viun3g06151 400 MobiDBLite consensus disorder prediction 30 55 - -
Viun3g06151 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Viun3g06151 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06151 Viun-Chr3 64878924 64883099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06151 66 346 Eukaryotic Initiation Factors Gene Family AT4G34110 25.784 3.56e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06151 - - gmx:100796848 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06151 3 64878924 64883099 Viun6g02311 6 28524136 28527472 PCT