Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06150 ATGGCCCAACAACCCAACCAGCAATATCCCCAACAGCAGCAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCATCGGCCCAGCCTCCTCCACAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTACCTCTACACGTGCTTCGCTCACACAGGCGAGGTGGCTTCAGTTAAAGTCATTAGGAACAAACAAACCAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTACTCGTGCTGGTGCCGAGAGAATCCTTCAAACATACAACGGAACCATCATGCCAAATGGTGGTCAGAACTTCAGATTGAACTGGGCTTCGTTTAGTGCGGGGGACAGGCGTCATGATGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCACGCTATCCCTCGGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTTACTGGTCGTACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAGGGGGTTCTTTGTTCAACAAGACCCATGCGAATTGGACCTGCCTCTAATAAAAACCCTAGCACCCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACCGATGACCATTTGAGGCAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTTCAATTTGCGGACAGGAGCTGTGCAGAAGAGGCTTTGCGGGTTTTAAACGGTACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCGAATCAGTGGAATGGCAGCAGTGGTGGTTACTATGGATATGCTGCGCAGGGTTATGAAAATTATGGTTATGCTCCTGCAGGACAAGACCCCAATATGTATGGCAGTTATCCGGGCTACGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1179 0.4902 MAQQPNQQYPQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTTRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06150 392 Gene3D - 236 362 IPR012677 -
Viun3g06150 392 Gene3D - 1 139 IPR012677 -
Viun3g06150 392 MobiDBLite consensus disorder prediction 220 255 - -
Viun3g06150 392 SUPERFAMILY RNA-binding domain, RBD 133 236 IPR035979 GO:0003676
Viun3g06150 392 Gene3D - 140 235 IPR012677 -
Viun3g06150 392 FunFam Polyadenylate-binding protein RBP45C 234 363 - -
Viun3g06150 392 SUPERFAMILY RNA-binding domain, RBD 240 357 IPR035979 GO:0003676
Viun3g06150 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 136 IPR000504 GO:0003723
Viun3g06150 392 SMART rrm1_1 257 324 IPR000504 GO:0003723
Viun3g06150 392 SMART rrm1_1 57 132 IPR000504 GO:0003723
Viun3g06150 392 SMART rrm1_1 150 224 IPR000504 GO:0003723
Viun3g06150 392 MobiDBLite consensus disorder prediction 223 255 - -
Viun3g06150 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 214 IPR000504 GO:0003723
Viun3g06150 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 321 IPR000504 GO:0003723
Viun3g06150 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 123 IPR000504 GO:0003723
Viun3g06150 392 CDD RRM2_SECp43_like 148 227 - -
Viun3g06150 392 CDD RRM1_SECp43_like 57 137 - -
Viun3g06150 392 MobiDBLite consensus disorder prediction 1 51 - -
Viun3g06150 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 228 IPR000504 GO:0003723
Viun3g06150 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 328 IPR000504 GO:0003723
Viun3g06150 392 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g06150 392 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 47 332 - -
Viun3g06150 392 MobiDBLite consensus disorder prediction 372 392 - -
Viun3g06150 392 MobiDBLite consensus disorder prediction 378 392 - -
Viun3g06150 392 FunFam Polyadenylate-binding protein RBP45 1 140 - -
Viun3g06150 392 MobiDBLite consensus disorder prediction 22 47 - -
Viun3g06150 392 SUPERFAMILY RNA-binding domain, RBD 19 137 IPR035979 GO:0003676
Viun3g06150 392 FunFam Polyadenylate-binding protein RBP45C 141 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06150 Viun-Chr3 64878924 64883184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06150 255 334 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 9.01e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06150 - - gmx:100796848 669.848