Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06108 ATGGCTACGTCAACTACACCCCTCCTACTTTCATGCTTCATGCTACACCTTGCTTCAACCATTGTCATTGCTCATTCAACAGAGAACAACTACTACTACAACAACACTCCCTCAAAGTATATTCCTAAGAAACCATTGCTCAACGTGATAGACTCTTGCTGGAGGGCCAAGCCAAATTGGAGCTCAAATCGCCAAGCTTTGGCTGATTGTGCAGTTGGCTTTGGCAAAGACGCCACAGGAGGCAAATACGGTGCAATATACCGTGTCTCCGATCCCTCCGATGACCCTGCAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAAATGAGCCACTCTGGATCATCTTTGACAAAAACATGGTCATTACACTAAAAAACGAGCTTATTATGAGTAGCAACAAGACCATCGATGGAAGAGGAGCGAGAGTGGAGATTGCTGATGGACCCTGCATTACAATATCAAATGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCGAACCGGCCAAGCCTGGCATTAGCACTCCGAACCATGTTGGCCATCGTTTAGGCTCAGATGGAGATGCCATCAGCATAATTGATTCCACCAATGTTTGGATTGATCACTGTTTTCTGGCTCGTTCCACCGATGGCTTAATCGATGTTATTCGTGCCTCAACCGCCATTACCATCTCCAACAATTACTTTACTCAGCACGACAAAGTTATGTTGCTAGGACACAGTGACCAATTCACAAAGGATAAAATAATGAAAGTGACAATAGCCTTCAACCAGTTTGCTAGTGGCCTAACTGAGAGGATGCCAAGGGTGAGATTTGGTTATGCTCATGTGGTGAACAACAAATATGATGAGTGGCAAATGTATGCTATTGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCGAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGTGAAGGAGAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTCAATGATGCTTATTTTGTACCCTCTGGATTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATCTTTTGTTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTCAATGCAGGCCCCATGTATTGTACTGTTGGGAGAGCATGTTAG 1179 0.4436 MATSTTPLLLSCFMLHLASTIVIAHSTENNYYYNNTPSKYIPKKPLLNVIDSCWRAKPNWSSNRQALADCAVGFGKDATGGKYGAIYRVSDPSDDPANPKPGTLRYGAIQNEPLWIIFDKNMVITLKNELIMSSNKTIDGRGARVEIADGPCITISNVSHVIIHGISIHDCEPAKPGISTPNHVGHRLGSDGDAISIIDSTNVWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWQMYAIGGSANPTILSEGNFYVAPNDPNAKQVTKREVKENWKSWKWRSSKDLFFNDAYFVPSGFGSCAPNYSPTQSFVAAPAYMVPAITLNAGPMYCTVGRAC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 129 145 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 93 118 IPR018082 -
Viun3g06108 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Viun3g06108 392 PANTHER PECTATE LYASE 18-RELATED 43 390 IPR045032 GO:0030570
Viun3g06108 392 SUPERFAMILY Pectin lyase-like 48 383 IPR011050 -
Viun3g06108 392 Gene3D - 47 385 IPR012334 -
Viun3g06108 392 Pfam Pectate lyase 128 310 IPR002022 -
Viun3g06108 392 SMART amb_all 121 316 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06108 Viun-Chr3 64661973 64663392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06108 40 392 Polysaccharide Lyase AT1G11920 67.135 0.0 508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06108 3 64661973 64663392 Viun3g06108 3 64661973 64663392 ECH
Viun3g06108 3 64661973 64663392 Viun6g02263 6 28214521 28216361 PCT