Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06103 ATGGAGGTTGCTGTCCCAAGAAAAGAACGGTCAAAAGCATCGAAAACCGAGGATAAGCCGGAATTGTCCAGATGCTCTAAAGTTTACGGAAAATCGAAGAGAAAAGCTGGAGAAATCTCTGAGAATGGTGATAAGAAATCCGAACTGAAAGGGAAAGAAGGTAGGATGTGTTTAAAGAAGAATTTAAGGGTGACTAAAAAGAAGAGAGAGGTTCGAGAAAACTGCATGTTTGATAATATACAACCAAAGTTAGATGCGAAAGAAGATTCTTGTTCACCGAGGACAAGAAAACTACCATGCAAGAGAAGAGGTGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATGAAGATGATCTCTTGATTGATGATTTAGAAGATGAAGAAATGCTTGTTCTCTTAAGAGCAAAGACCAGGACCAGATCGAGAAGAATGAATGATGTGAAGGATGTTGAACAAAAGCCCCGAATTTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAAATGTACTGTATGCAGTGTGTGGATAAATGGTACCCTGATATGACAATAGAAGAAATTGCTGCAAGTTGCCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGCTTGCGCGCAAGAGGAATGATTAAGACATCTAACAGGGACATAAATGATTGTGAACAAGCTCAGTATCTGCATTATATGATCAACTTACTCCTACCATTTTTGAAACAAATCTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAACCTTCTTTTGAGAAGGAAATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAATTGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGATGGAAGCATTACACCTCGGGTGGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCAGTGTCTAATGATATCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAATCATCAGATGTGCACCAAAGGAGTTGGGGGGTTGTGGCAGTGCTGCATTGGAGCTGAAACGTGTCCTACCAAGTGGGTGGATATCTGAATTGGAAACCAAAGCTCGCAGTACGCTGAAAATTTGGGAAGATGAAAACACAACTCTTCAGCTAGAAAAACCAGTATCAAGCTACACCTCTTTGAGAAATGAAGCTGTTAAAGAAGACATAAGTGACAATAATATGCACTGTTCAGAGTCAAGTAGCATTCAGAAGGAAGGGTTGTTACTTTTCCAAAAGCATTGGGCTAATGGCGAACCAGTTATAGTTCGTGATGCCCTTAAACTGGGTACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTATGTGAAAATAGGGTTTCAGAGGTCAGTTCAAAGATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCACACATTTTTCAAAGGTTATATTGAGGGAAGAACATACAGAAATCTGTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCGCGCCACTGTGATGAGTTTATTCGCTCATTGCCATTCCAAGAGTACAGCGATCCTCGGAGCGGAATTCTCAATCTTGCTACGAAGTTGCCAACCCATGTCCTAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGCGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACCCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAGTTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGATGAAGAGAGGGTTACCGACAGCCTGAATTGCCGAACTTTCAAAGACAACAAAGTACAGATAGAAAACAAGGTAGTTTTAGAATCCAAAGACATAGAGAAGCGTCCTATTGAAATTAATGGAAAGTTCTTTCCAAATGATGTACATGAAGAGGTCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGGAGAGAAGATTCTAAGAAGTTAGAAACATATCTCATAAAACACTCAAAAGAATTTAGACACACTTATTGTTCTCCAGTTGAACAGGTTGCACACCCAATTCATGACCAATGTTTTTATTTGACATGGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAGAAACTTGGGGAAGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTGAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTCGTGTCTCCGGAAAATATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCCAGGGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCAGAGACCTAAAAGCTTTACTGAAGTTTTCATGA 2649 0.4085 MEVAVPRKERSKASKTEDKPELSRCSKVYGKSKRKAGEISENGDKKSELKGKEGRMCLKKNLRVTKKKREVRENCMFDNIQPKLDAKEDSCSPRTRKLPCKRRGEKQKLTVSNKKRKYEDDLLIDDLEDEEMLVLLRAKTRTRSRRMNDVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCVDKWYPDMTIEEIAASCPFCQKNCNCNVCLRARGMIKTSNRDINDCEQAQYLHYMINLLLPFLKQICHEQSQEEQIEAKILGKPSFEKEIPRSLCGNDERVYCDHCATSIIDLHRSCPNCSYELCLSCCQEIRDGSITPRVEQKFSYVNRGYDYMHGGDPLPVSNDIRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELKRVLPSGWISELETKARSTLKIWEDENTTLQLEKPVSSYTSLRNEAVKEDISDNNMHCSESSSIQKEGLLLFQKHWANGEPVIVRDALKLGTGLSWKPMVMWRALCENRVSEVSSKMSEVKAIDCLANCEVEIDTHTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLATKLPTHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLVISKLKEAHKVQDEREQCDEERVTDSLNCRTFKDNKVQIENKVVLESKDIEKRPIEINGKFFPNDVHEEVASAIENESTETGSALWDIFRREDSKKLETYLIKHSKEFRHTYCSPVEQVAHPIHDQCFYLTWEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVRDLKALLKFS 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06103 882 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 32 878 IPR045109 GO:0032454|GO:0033169
Viun3g06103 882 ProSiteProfiles JmjC domain profile. 580 845 IPR003347 -
Viun3g06103 882 Gene3D Cupin 441 854 - -
Viun3g06103 882 SMART cupin_9 561 845 IPR003347 -
Viun3g06103 882 Pfam JmjC domain, hydroxylase 725 828 IPR003347 -
Viun3g06103 882 CDD cupin_RmlC-like 769 829 - -
Viun3g06103 882 MobiDBLite consensus disorder prediction 86 111 - -
Viun3g06103 882 ProSiteProfiles Zinc finger RING-type profile. 160 206 IPR001841 -
Viun3g06103 882 MobiDBLite consensus disorder prediction 1 51 - -
Viun3g06103 882 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 156 225 IPR018866 -
Viun3g06103 882 SUPERFAMILY Clavaminate synthase-like 461 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06103 Viun-Chr3 64630076 64635157 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g06103 JmjC 7.8e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06103 K15601 K21989 gmx:100797860 1356.66