Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06101 ATGGTCATCGAATTTATATTGGGGGGTTCTTTGATTCACAGCTTCCTTTGCTCTGTGTATGAAGTAACAATGGAGGTTGCTGTCCCAAGAAAAGAACGGTCAAAAGCATCGAAAACCGAGGATAAGCCGGAATTGTCCAGATGCTCTAAAGTTTACGGAAAATCGAAGAGAAAAGCTGGAGAAATCTCTGAGAATGGTGATAAGAAATCCGAACTGAAAGGGAAAGAAGGTAGGATGTGTTTAAAGAAGAATTTAAGGGTGACTAAAAAGAAGAGAGAGGTTCGAGAAAACTGCATGTTTGATAATATACAACCAAAGTTAGATGCGAAAGAAGATTCTTGTTCACCGAGGACAAGAAAACTACCATGCAAGAGAAGAGGTGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATGAAGATGATCTCTTGATTGATGATTTAGAAGATGAAGAAATGCTTGTTCTCTTAAGAGCAAAGACCAGGACCAGATCGAGAAGAATGAATGATGTGAAGGATGTTGAACAAAAGCCCCGAATTTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAAATGTACTGTATGCAGTGTGTGGATAAATGGTACCCTGATATGACAATAGAAGAAATTGCTGCAAGTTGCCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGCTTGCGCGCAAGAGGAATGATTAAGACATCTAACAGGGACATAAATGATTGTGAACAAGCTCAGTATCTGCATTATATGATCAACTTACTCCTACCATTTTTGAAACAAATCTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAACCTTCTTTTGAGAAGGAAATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAATTGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGATGGAAGCATTACACCTCGGGTGGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCAGTGTCTAATGATATCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAATCATCAGATGTGCACCAAAGGAGTTGGGGGGTTGTGGCAGTGCTGCATTGGAGCTGAAACGTGTCCTACCAAGTGGGTGGATATCTGAATTGGAAACCAAAGCTCGCAGTACGCTGAAAATTTGGGAAGATGAAAACACAACTCTTCAGCTAGAAAAACCAGTATCAAGCTACACCTCTTTGAGAAATGAAGCTGTTAAAGAAGACATAAGTGACAATAATATGCACTGTTCAGAGTCAAGTAGCATTCAGAAGGAAGGGTTGTTACTTTTCCAAAAGCATTGGGCTAATGGCGAACCAGTTATAGTTCGTGATGCCCTTAAACTGGGTACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTATGTGAAAATAGGGTTTCAGAGGTCAGTTCAAAGATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCACACATTTTTCAAAGGTTATATTGAGGGAAGAACATACAGAAATCTGTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCGCGCCACTGTGATGAGTTTATTCGCTCATTGCCATTCCAAGAGTACAGCGATCCTCGGAGCGGAATTCTCAATCTTGCTACGAAGTTGCCAACCCATGTCCTAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGCGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACCCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAGTTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGATGAAGAGAGGGTTACCGACAGCCTGAATTGCCGAACTTTCAAAGACAACAAAGTACAGATAGAAAACAAGGTAGTTTTAGAATCCAAAGACATAGAGAAGCGTCCTATTGAAATTAATGGAAAGTTCTTTCCAAATGATGTACATGAAGAGGTCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGGAGAGAAGATTCTAAGAAGTTAGAAACATATCTCATAAAACACTCAAAAGAATTTAGACACACTTATTGTTCTCCAGTTGAACAGGTTGCACACCCAATTCATGACCAATGTTTTTATTTGACATGGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGAACCATGGACTTTTGAGCAGAAACTTGGGGAAGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTGAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTCGTGTCTCCGGAAAATATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCCAGGGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCAGAGACCTAAAAGCTTTACTGAAGTTTTCATGA 2712 0.4078 MVIEFILGGSLIHSFLCSVYEVTMEVAVPRKERSKASKTEDKPELSRCSKVYGKSKRKAGEISENGDKKSELKGKEGRMCLKKNLRVTKKKREVRENCMFDNIQPKLDAKEDSCSPRTRKLPCKRRGEKQKLTVSNKKRKYEDDLLIDDLEDEEMLVLLRAKTRTRSRRMNDVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCVDKWYPDMTIEEIAASCPFCQKNCNCNVCLRARGMIKTSNRDINDCEQAQYLHYMINLLLPFLKQICHEQSQEEQIEAKILGKPSFEKEIPRSLCGNDERVYCDHCATSIIDLHRSCPNCSYELCLSCCQEIRDGSITPRVEQKFSYVNRGYDYMHGGDPLPVSNDIRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELKRVLPSGWISELETKARSTLKIWEDENTTLQLEKPVSSYTSLRNEAVKEDISDNNMHCSESSSIQKEGLLLFQKHWANGEPVIVRDALKLGTGLSWKPMVMWRALCENRVSEVSSKMSEVKAIDCLANCEVEIDTHTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLATKLPTHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLVISKLKEAHKVQDEREQCDEERVTDSLNCRTFKDNKVQIENKVVLESKDIEKRPIEINGKFFPNDVHEEVASAIENESTETGSALWDIFRREDSKKLETYLIKHSKEFRHTYCSPVEQVAHPIHDQCFYLTWEHKKKLKEEFEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVRDLKALLKFS 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06101 903 MobiDBLite consensus disorder prediction 110 134 - -
Viun3g06101 903 SUPERFAMILY Clavaminate synthase-like 484 897 - -
Viun3g06101 903 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 54 899 IPR045109 GO:0032454|GO:0033169
Viun3g06101 903 ProSiteProfiles JmjC domain profile. 603 866 IPR003347 -
Viun3g06101 903 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Viun3g06101 903 SMART cupin_9 584 866 IPR003347 -
Viun3g06101 903 CDD cupin_RmlC-like 792 850 - -
Viun3g06101 903 Gene3D Cupin 464 875 - -
Viun3g06101 903 MobiDBLite consensus disorder prediction 52 73 - -
Viun3g06101 903 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 179 248 IPR018866 -
Viun3g06101 903 Pfam JmjC domain, hydroxylase 748 849 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06101 Viun-Chr3 64630075 64635157 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g06101 JmjC 5.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06101 K15601 K21989 gmx:100797860 1347.8