Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06093 ATGGAGGGTGGTTCTAACGAGGCTTCCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAATCGTAATCTTAATGAACACACGAACACAGACACTCTCTTCCTTCCCATGCCTAGTACTAATAACAATCACCACCCAAACCCAAACCGCAGTAGCATCCACCACATTAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACAACAGCAACAACAACGATGGAAGTTCCTCTTCTTCTTCTTCTGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAACCGCTAGAATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGACGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACTATTTCTTCTTCCGACACTGCTTGTAATGAAGATGGTGATAGGAATGGATCAACTGAAAATATGGATGTACGTAACAACATGATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTATCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGGAAGCTGCCGAAGGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAACTGGCTCTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCGATCTCTCCCACACAATGCTCTAG 1119 0.4611 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHAGHHPLNPNLNNPNRNLNEHTNTDTLFLPMPSTNNNHHPNPNRSSIHHINHNTNTSELGYFMEIHNRNTNNSNNNDGSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKDAMLFLQRIECQFKSLTISSSDTACNEDGDRNGSTENMDVRNNMIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPDLSHTML 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06093 372 FunFam Homeobox protein knotted-1-like 2 280 342 - -
Viun3g06093 372 SMART HOX_1 277 342 IPR001356 GO:0003677
Viun3g06093 372 Pfam ELK domain 255 275 IPR005539 GO:0003677
Viun3g06093 372 CDD homeodomain 287 339 IPR001356 GO:0003677
Viun3g06093 372 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Viun3g06093 372 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Viun3g06093 372 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Viun3g06093 372 SMART ELK_2 255 276 IPR005539 GO:0003677
Viun3g06093 372 ProSitePatterns 'Homeobox' domain signature. 313 336 IPR017970 GO:0000981|GO:0006355
Viun3g06093 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 344 - -
Viun3g06093 372 ProSiteProfiles ELK domain profile. 255 275 IPR005539 GO:0003677
Viun3g06093 372 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g06093 372 Pfam KNOX2 domain 173 219 IPR005541 GO:0003677|GO:0005634
Viun3g06093 372 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
Viun3g06093 372 MobiDBLite consensus disorder prediction 35 86 - -
Viun3g06093 372 Pfam KNOX1 domain 121 160 IPR005540 GO:0003677|GO:0005634
Viun3g06093 372 SUPERFAMILY Homeodomain-like 277 353 IPR009057 -
Viun3g06093 372 MobiDBLite consensus disorder prediction 102 122 - -
Viun3g06093 372 MobiDBLite consensus disorder prediction 40 86 - -
Viun3g06093 372 Gene3D - 280 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06093 Viun-Chr3 64585567 64590527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06093 97 372 Homeobox Transcription Factor Family AT1G62360 75.779 1.19e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun3g06093 KNOX2 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06093 - - gmx:100127401 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06093 3 64585567 64590527 Viun6g02241 6 28116463 28122295 PCT