Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06090 ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGAAGCAAGAACAATCCTGGGTCTGTTAACGGACCAAATGGACGCCGTCGATGGAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGAATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGAAGGGGGGACACCACAACCACCACAACTACAACAACAAACAAACCCGGGTCAAGATCCGAACCCGAACAGACCCGAATGCGTGGGTCCGAGGGGGTCGGGGTCGGGTTCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCTGCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAGAAGGAGGGTGGTGAGGATGCGGCGGTGGATAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTTCTGTAGAGTGTGTTCGAGAGAAATGTGGTTGAACAGAGGTAATTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA 591 0.5618 MSQLGLILQESLRTEREARTILGLLTDQMDAVDGAQRRRRTLKERLRFSGMGCCGATWVFRPTLRDEGGTPQPPQLQQQTNPGQDPNPNRPECVGPRGSGSGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVDNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGNCPLCNRSVLDILHIF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06090 196 MobiDBLite consensus disorder prediction 70 87 - -
Viun3g06090 196 CDD RING-HC 148 185 - -
Viun3g06090 196 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Viun3g06090 196 MobiDBLite consensus disorder prediction 64 108 - -
Viun3g06090 196 SMART ring_2 148 185 IPR001841 -
Viun3g06090 196 Pfam Zinc finger, C3HC4 type (RING finger) 145 190 - -
Viun3g06090 196 SUPERFAMILY RING/U-box 142 192 - -
Viun3g06090 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 193 IPR013083 -
Viun3g06090 196 PANTHER OS01G0917900 PROTEIN 5 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06090 Viun-Chr3 64547179 64548128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06090 21 196 C3H Transcription Factor Family AT4G22250 50.481 1.56e-52 166