Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06088 ATGGGGAAATCAGGGGGTAGGAGAAAGAAGGGTGGTTCGAACCCAAACCAGGGTGTGGTTGATAATTTGGGTTCAGGTGTTGGTGTCCCAACGGCTAACGGTGGGTCGGAGTTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAAGAGGTTCCAGAATAAGGACTATGCCGGTGCTCTTGAACAGTACGAGAGTGCCCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCGGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAAGCTGTGATTTCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCCGCTTTGTCCGGGCCCTTCTTCGCCGGGCCCGTGCCTACGAGGCTGTCGGGAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGGTGCTGATCCTAGTAACCGTGATGCTTTGGAGATCGCTCAGAGATTGAGGACTGCGTTGGGCCCGCGCCAGGAAGCCCAGCAGGACCTCCAAAGTCGACCCTCTCCAGCTGCTCTTGGCGCTTCCGCCGTCCGTGGCGCCCCTATTGCTGGATTGGGGCCCTGTTTGCCAGCCCGGCCAGTGGCGAAGAAGGGAGCCAATTCAGCAGTTGGATCTGTTGTGTTGCCTAATAGTAACAAGCTAGACAGCAAGGCACAACCGGTTTTGCCGACTGAAAATGGTTCTGATAACAAGTCCCACTTGCCAAAACTGGTGTTGAAGCCTTCAAGTGGTTCTCCAAAGCCATCTAACCCTGGGAAGGATGACCAGAAGGAACAGTCTTCGGGCATTCATGGGCAGCGTTCTCAGGCTGCAATTCTGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTCGCACAGATGCCTGTCAATTGCAACTTTAGAGTACTGAGGGATGTAGTGAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAATATAAGGATTGCGACGGTGATCTGGTGACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAACCATCTCCTCAAAGAACTTGGGGAAGTTAAAAGTGATTCTGTTTCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCGGAGCAGGAACCACCTTTATTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCAAGGGAGATGAGAGCGGATCTCATTCTTCCCTAGGCGAATCTGCCTCTGAAGTTCCTGACAGTGAGGTTGATAAGACAGAGAAGGAGGCTCCAAAGGAAAAGCAAGGAGCTACTGGAGATACTGAAAGCAAAGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGACGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTCGAGGAAACAGTAACTAGTGAGGAGGCCCAGGATCTATTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTAGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATCCCTCTGGATGAGTCAGCTGGGAAAGAGGTTGTGGCTGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCGTTGGCAAGACAGAAGTACGAGGAAGCACTCTCGATCAAATCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAGCAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCTGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGCGCCGAGGAGAAGATGAAAGCCGCAACAGATATGTGGGAGAAACTAGAGGAGCAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGATGAATTATTGAGAAGAAGAAAGAAACAAGGAGGTACTAGTGAAGGTGAGTCCTCCGCTGGTCAGGGTGATATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTAGGAATGAGTGGTTGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAAGCAGATATTTCCATGGTTCTAAAGAATCATTCCTCAAATGGTGATGCTAAAGATGGAGATGATAAAAAGGTTGAGAACACACGGCACAATAAGACCATTAAACCAGATATCAATAAGGCTAATGAAGTATGA 2325 0.4774 MGKSGGRRKKGGSNPNQGVVDNLGSGVGVPTANGGSELLDSSIFLKKANEMKEEGNKRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVISECTMALQVQPRFVRALLRRARAYEAVGKYEMAVQDVQFLLGADPSNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGANSAVGSVVLPNSNKLDSKAQPVLPTENGSDNKSHLPKLVLKPSSGSPKPSNPGKDDQKEQSSGIHGQRSQAAILWRPLKLVYDHDIRLAQMPVNCNFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDNHLLKELGEVKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVKGDESGSHSSLGESASEVPDSEVDKTEKEAPKEKQGATGDTESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLARQKYEEALSIKSDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKDELLRRRKKQGGTSEGESSAGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKENLDAATERFKLAGASEADISMVLKNHSSNGDAKDGDDKKVENTRHNKTIKPDINKANEV 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06088 774 Coils Coil 616 636 - -
Viun3g06088 774 MobiDBLite consensus disorder prediction 226 247 - -
Viun3g06088 774 MobiDBLite consensus disorder prediction 636 662 - -
Viun3g06088 774 Gene3D Tetratricopeptide repeat domain 45 177 IPR011990 GO:0005515
Viun3g06088 774 SUPERFAMILY CAD & PB1 domains 290 359 - -
Viun3g06088 774 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g06088 774 MobiDBLite consensus disorder prediction 738 774 - -
Viun3g06088 774 MobiDBLite consensus disorder prediction 744 774 - -
Viun3g06088 774 CDD PB1 293 364 - -
Viun3g06088 774 SUPERFAMILY TPR-like 45 179 IPR011990 GO:0005515
Viun3g06088 774 MobiDBLite consensus disorder prediction 384 449 - -
Viun3g06088 774 Pfam PB1 domain 290 381 IPR000270 GO:0005515
Viun3g06088 774 MobiDBLite consensus disorder prediction 422 449 - -
Viun3g06088 774 PANTHER PROTEIN CLMP1 1 761 IPR044517 -
Viun3g06088 774 MobiDBLite consensus disorder prediction 226 283 - -
Viun3g06088 774 ProSiteProfiles PB1 domain profile. 290 382 IPR000270 GO:0005515
Viun3g06088 774 ProSiteProfiles TPR repeat profile. 122 155 IPR019734 GO:0005515
Viun3g06088 774 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Viun3g06088 774 MobiDBLite consensus disorder prediction 636 676 - -
Viun3g06088 774 SMART PB1_new 290 382 IPR000270 GO:0005515
Viun3g06088 774 Gene3D - 292 364 - -
Viun3g06088 774 SMART tpr_5 86 121 IPR019734 GO:0005515
Viun3g06088 774 SMART tpr_5 122 155 IPR019734 GO:0005515
Viun3g06088 774 SMART tpr_5 48 81 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06088 Viun-Chr3 64528237 64531256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06088 45 169 Calmodulin-binding Proteins AT3G25230 29.412 2.10e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06088 K26538 - gmx:100786963 1290.79