Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06070 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCGATCATCACCGTCACTCGTCAAAACGAAAACTAGACGAAGAAGATGACGGAGATTTCTCAGACTTAGTCTGTGTGAGGATGCGGAAAGAAGAGGCGGTGAATTCCTGGTCGGGTTCCTCCGGTGACGCCGGCAGCGGCTCTGCCGCGGCCTTGCAGAATACGCGATCCCACATCCAGTTCTTTGTGCGGATGATGTCAGCCGGAAACACGATTGTGATGCAAGCGTTTCCCGAGGACAGTGTGAAATCGATTCACGAACGTATCCAAAGCATGAAGGGAATCCCGGTGTTTGAACAGAGATTAATTTATCGCGGAAAGCAGCTTCAGTGGGAGCAGACTCTGGCCGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTAGGTCGCATGCGCAGTACTGAACACCCTCAGGCATGGCAAATAATCAACGACATGGTTTCCCTCGTGTATCGACTCTGCTGTGGTGAGACTGTTCACGATTCACTGAAGACTATCAAAGGGTTAATCACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGATTGTGCCGAGTCTTCTGTTAGGCACTTTTTGAGTTCTTGCCGGAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCGTGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAAGTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAACAACAAGCTGTCGACGGTTCTATGGCTGAAGACAAAAGCAATAATGATCTCTTGCATGCCAAAGAGATTGAATATCTTCACTGTTTGTACATTCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATGGACCAGAGCTTGGCTGGCCAGGAGATGATGGAAGGGGATAATCTTTATCCTGGGTGGTCTCATTATCTTTCCATCCTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGCTGTGTCTGTTGATTGTTCGATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTACGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTGTTGGCCGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAGCTATATTGGTTTAGAGGATATAAGGAGCGCGGACCCTTGTCTGTATAATGGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAGTTGGGACAGAGGAAAGTGGTTGAGCTCTGCTCTGGGGGAAAAAACGTTGTAGTTAATAGTAAGAACAGGGATAAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCGAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGACACCATTTCTGTTGAGGATTGGAAAGCACACACCGAGTATAATGGTTACAGTGAGACAGATATTCAGATCTCTTGGTTTTGGGAGATTGTTGGGAGTATGACAGCTGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCACGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCATACATGCTTTTTCCGGCTGTGTTTCCCGGCTTATTTATCTATGGCTGTCATGAAAGAACGTCTCGAACTCATCACTCAAGAACACATTGGGTGCAGTTTTGGTACTTGGTGA 2595 0.4474 MSMIETPAVHHLSGGADHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSGSSGDAGSGSAAALQNTRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGSNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVDGSMAEDKSNNDLLHAKEIEYLHCLYIQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPGWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRNVLCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGSYIGLEDIRSADPCLYNGCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCSGGKNVVVNSKNRDKYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYSETDIQISWFWEIVGSMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYLSMAVMKERLELITQEHIGCSFGTW 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06070 864 SUPERFAMILY Ubiquitin-like 74 161 IPR029071 -
Viun3g06070 864 Gene3D Hect, E3 ligase catalytic domains 504 729 - -
Viun3g06070 864 Pfam HECT-domain (ubiquitin-transferase) 553 856 IPR000569 GO:0004842
Viun3g06070 864 Gene3D Hect, E3 ligase catalytic domain 747 863 - -
Viun3g06070 864 CDD HECTc 503 862 IPR000569 GO:0004842
Viun3g06070 864 Gene3D - 67 162 - -
Viun3g06070 864 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 67 162 - -
Viun3g06070 864 SMART hect_3 522 862 IPR000569 GO:0004842
Viun3g06070 864 SUPERFAMILY Hect, E3 ligase catalytic domain 499 850 IPR035983 GO:0004842
Viun3g06070 864 FunFam E3 ubiquitin-protein ligase UPL5 748 863 - -
Viun3g06070 864 MobiDBLite consensus disorder prediction 1 31 - -
Viun3g06070 864 PRINTS Ubiquitin signature 127 148 IPR019956 -
Viun3g06070 864 PRINTS Ubiquitin signature 85 105 IPR019956 -
Viun3g06070 864 PRINTS Ubiquitin signature 106 126 IPR019956 -
Viun3g06070 864 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 74 862 - -
Viun3g06070 864 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 624 706 - -
Viun3g06070 864 SMART ubq_7 74 146 IPR000626 GO:0005515
Viun3g06070 864 MobiDBLite consensus disorder prediction 12 31 - -
Viun3g06070 864 Gene3D Hect, E3 ligase catalytic domain 624 706 - -
Viun3g06070 864 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Viun3g06070 864 ProSiteProfiles Ubiquitin domain profile. 74 150 IPR000626 GO:0005515
Viun3g06070 864 ProSiteProfiles HECT domain profile. 524 864 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06070 Viun-Chr3 64413687 64422760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06070 74 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 3.43e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06070 - - gmx:100789233 1534.24