Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06061 ATGGTTTCTGCGGAGAATGATTCGCATTCCACTTCCGATCAAGCTACTCATGACCATTCATCCGTTTCCGACAAAGCTCACAGAAGCATCGGCAAGTCCATGCGAACAGTGCGCTCCAAATTGTTCCGACGCGACCACGCCACCTGCGTCTCCGATAGCCTAACCGATTCGCTCATGGAACTCGCCTCGCGAAACTCCAAGTCAGTTAAATCTTCCGTTACGGAGGAGCAACTTCTCGAGCTCTCTCAAGCTTTGAGCGATTTCTCTGCCTGTAGCAGCGATATCTCTGGAGAGCTCCAGAGGCTCGCAACGGTATCCTCCTACGAACCTGCAGTTGACGGGGATCGCGAGCCCGAACCTGAGCCAGAGCCTTGCCTAGGGTTTCTCCAACGGGAGAGTTTCTCCACGGAGATAATCGAGAGTATCTCGCCGGAGGATCTTCAGCCCACGGTCAAGATCTGCGTCGACGGACTGCATTCTCCGTCCGTGGCGGTGAAGCGATCGGCGGCGGCGAAGCTGAGGCTCTTGGCGAAGAACAGAGCGGACAACCGCGCTCTTATCGGCGAGTCCGGTGCGGTGCCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAGCACGCGGTGACGGCGTTGCTGAATCTGTCTCTTCTGGAGGAGAACAAGGCTCTGATAACGAATGCCGGTGCGGTGAAGTCACTGATTTACGTGCTTAAAACAGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTGATGAGTCTTGCGTTGGTGGAGGAGAACAAGATCTCGATCGGTGCTTGCGGGGCGATACCGCCGCTGGTTTCGCTGCTACTGAATGGGTCCCACAGAGGGAAGAAGGACGCACTGACGACGCTGTATAAGCTGTGTTCGGTGCGGCAGAACAAAGAGAGGGCGGTGAGCGCAGGGGCAGTGAAGCCGCTGGTGGAGTTGGTGGCGGAGGAAGGGAGCGGGATGGCGGACAAGGCAATGGTGGTGCTAAACAGCTTGGCGGGGATTGAAGAGGGAAAAGAGGCGATCGTGGAAGAAGGTGGTATTGCTGCGCTTGTGGAAGCGATCGAAGATGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTCTGACTCTTGTTCAGCTCTGTGCTCACAGTGTTAGTAACAGAGGTTTGCTTGTGAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCACAAGACTTCACCAGCATTGGGTTGA 1269 0.5658 MVSAENDSHSTSDQATHDHSSVSDKAHRSIGKSMRTVRSKLFRRDHATCVSDSLTDSLMELASRNSKSVKSSVTEEQLLELSQALSDFSACSSDISGELQRLATVSSYEPAVDGDREPEPEPEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLHSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKTGTETSKQNAACALMSLALVEENKISIGACGAIPPLVSLLLNGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEEGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLVQLCAHSVSNRGLLVREGGIPPLVALSQNGSVRAKHKTSPALG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06061 422 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g06061 422 MobiDBLite consensus disorder prediction 11 31 - -
Viun3g06061 422 FunFam U-box domain-containing protein 4 137 289 - -
Viun3g06061 422 SMART arm_5 344 384 IPR000225 GO:0005515
Viun3g06061 422 SMART arm_5 221 261 IPR000225 GO:0005515
Viun3g06061 422 SMART arm_5 262 302 IPR000225 GO:0005515
Viun3g06061 422 SMART arm_5 180 220 IPR000225 GO:0005515
Viun3g06061 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Viun3g06061 422 SUPERFAMILY ARM repeat 148 421 IPR016024 -
Viun3g06061 422 Gene3D - 135 288 IPR011989 -
Viun3g06061 422 Gene3D - 289 419 IPR011989 -
Viun3g06061 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Viun3g06061 422 PANTHER U BOX DOMAIN-CONTAINING 96 420 - -
Viun3g06061 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Viun3g06061 422 FunFam U-box domain-containing protein 4 290 422 - -
Viun3g06061 422 Pfam Armadillo/beta-catenin-like repeat 182 219 IPR000225 GO:0005515
Viun3g06061 422 Pfam Armadillo/beta-catenin-like repeat 264 302 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06061 Viun-Chr3 64353141 64355667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06061 66 416 U-box Gene Family AT2G23140 44.293 1.14e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06061 - - gmx:100792402 650.588