Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06056 ATGCAAACGTCTCAGAAGCACCCAGGTTCGGGTGGTGTACACTTCTATCACCACCAGCCGGTGAAAGGCATTTACCAAGTGTTGCAGAGCGATAGCAGCAGCCAGGGAACAAGCGTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCCGCACCCACCACAGGTTTCATGGAGTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGTAGTCCATTTTCACCACAAGGTTCTCATTCATGCGGTTCAGATCACCACCAATCCTCTGACAACACCTACGGATCGCCGATAAGCGGTTTGTCCAGCGTTGACGATGGGCATGAACTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGCCCGACGAATCCGACATCGAAGACAGTTTTGGCTGCTGCGTCAGGGGTAGCAGTAGCAGACTCGACGGAGCATCTAAACAAAACTGGGAGCAGATTGCTGAAAATATTCCACGATTCGACCTGAAAGGAGTTCTCAGGGTATGTGCACAGGCGGTGTCTGACGATGATGTTGGAACAGCAAGAGGGTGGATGGATAACGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGATTGGGTGCTTACTTGCTGGAGGGGCTTAGAGCGAGGTTGGAATCATCAGGGAATCTCATCTACAAATCCTTGAAGTGCGAACAACCAACAAGCAAAGAATTGATGAGTTACATGCACATTTTGTACCAGATTTGCCCATACTGGAGGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCCATGGCTAACGAGTCCAGGATTCATATAATAGATTTCCAAGTAGCGCAGGGCACACAGTGGTATTTACTCATCCAGGCTCTTGCACAAAGACCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCAGTCGTTTCATGCTCGAGGTGGAGGGCTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCACAGTGCTGCTATGTCTGGGTGTGAGGTTGTGCGAGGGAGTGTTGAAATTCGACCCGGGGAAGCCCTGGCTGTAAATTTTCCTTTCGTTTTGCACCACATGGCAGATGAGAGTGTGAGCACCGAGAATCACAGAGACAGATTGTTGAGGTTGGTGAAGAGCTTGTCTCCCAAGGTTGTCACCCTTGTCGAGCAAGAATCCAACACCAACACATCTCCTTTCTTTTACAGGTTTGTTGAGACGCTGGATTACTACACTGCCATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGACGATCAGAAGCGCATCAGCGCAGAGCAGCATTGTTTGGCGCGAGACATCGTCAACATGATAGCTTGTGAAGGGTCTGAGAGAGTGGAAAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCAGGATTTAAACAGTGCCAATTGAGCTCTTCTGTCATGGTTGCTACCCAGAATCTCCTAAACGAATTCAGTCAAAATTATAGGCTTGAACATAAAGATGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGATGA 1626 0.4785 MQTSQKHPGSGGVHFYHHQPVKGIYQVLQSDSSSQGTSVSFESCKEQYFTLESCPAPTTGFMECDDSPSYASVSSKSSPFSPQGSHSCGSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPDESDIEDSFGCCVRGSSSRLDGASKQNWEQIAENIPRFDLKGVLRVCAQAVSDDDVGTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPTSKELMSYMHILYQICPYWRFAYISANAVITEAMANESRIHIIDFQVAQGTQWYLLIQALAQRPGGPPSLRVTGVDDSQSFHARGGGLEIVGERLSEFARSCGVPFEFHSAAMSGCEVVRGSVEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFVETLDYYTAMFESIDVACPRDDQKRISAEQHCLARDIVNMIACEGSERVERHELLGKWRSRLSMAGFKQCQLSSSVMVATQNLLNEFSQNYRLEHKDDALYLGWMNRHMATSSAWR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06056 541 Pfam GRAS domain family 173 541 IPR005202 -
Viun3g06056 541 ProSiteProfiles GRAS family profile. 161 541 IPR005202 -
Viun3g06056 541 MobiDBLite consensus disorder prediction 72 106 - -
Viun3g06056 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 531 IPR005202 -
Viun3g06056 541 MobiDBLite consensus disorder prediction 72 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06056 Viun-Chr3 64329198 64331992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06056 1 541 GRAS Transcription Factor Family AT4G17230 59.779 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun3g06056 GRAS 6.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06056 - - gmx:100776109 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06056 3 64329198 64331992 Viun6g02195 6 27741277 27744983 PCT