Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06043 ATGGGTGGTGATGAGGCTCGACAATCATTGCTCTCAGAACATTCAAATGAGAAAAATGGCCTCCAGAGGAGAAGGCCTAGTGCATTGGAGAAGGAGATCAACCACAGAGGACATAATGATGAAAAAAAGCCTTTGAATTCTCTAGCAGAATTCCATTTCAGACCAGTGTTGTTTTGGTTAGCTGCATACCTAGGTGGAGGAACTATTTGCTTCCTTCTCACACAGCATCACATAAAGGGTATAAAAACAAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTAACAATGACAACAGTTGGATATGGAGATCTTGTGCCAGATAGCGACCTTTCAAAACTTCTTGCTTGCATTTACGTCTTCACTGGAATGGCTCTTGTAGGGTTAATTCTTAGCAAAGCAGCAGATTATATTGTTGAAAAGCAGGAAATCATTCTTGTTAAAACCATATTCAAGGGTGAAAATTATGGTCCAGAACAGGTTTCCAAAGAGGTTGAAACCAACAAAGCTAAATACAAACTCATCCTGACAGCATCCATCTTTTTGGTGCTTATGATTGAGGGGACTATTTTTCTGTATTTTATTGAAAATCTGGATTTTGTTGATGCCTTTTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTTTCCACCACTTTTGGTCGTGCTTTTGCTGTCTTCTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATATAGCTGAACTTTATACTGAAAAAAGACAAAGGTCCCTTGCAAAAAGGGTTCTTGCACGAAAATTGTCACTCCTTGATCTTGAGGCAGCTGATCTTGATGGAGATCATGTAGTCAGTTCTACAGAGTTCGTGTTGTATAAATTGAAGGAAATGGGAAAGATCAGCCAAGATGATATTTTAGCTGTTCTGGATATTTTTAGACAACTAGATTTTGATCAATCAGGAACACTGACAGAAGCTGATCTCAGACCTAACCATGACTGA 1005 0.391 MGGDEARQSLLSEHSNEKNGLQRRRPSALEKEINHRGHNDEKKPLNSLAEFHFRPVLFWLAAYLGGGTICFLLTQHHIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSDLSKLLACIYVFTGMALVGLILSKAADYIVEKQEIILVKTIFKGENYGPEQVSKEVETNKAKYKLILTASIFLVLMIEGTIFLYFIENLDFVDAFYCVCSTVTTLGYGDKSFSTTFGRAFAVFWILSSTICLAQSFAYIAELYTEKRQRSLAKRVLARKLSLLDLEAADLDGDHVVSSTEFVLYKLKEMGKISQDDILAVLDIFRQLDFDQSGTLTEADLRPNHD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06043 334 PRINTS Two pore domain K+ channel signature 212 221 IPR003280 GO:0005267|GO:0016020|GO:0071805
Viun3g06043 334 PRINTS Two pore domain K+ channel signature 95 123 IPR003280 GO:0005267|GO:0016020|GO:0071805
Viun3g06043 334 FunFam Two-pore potassium channel 1 154 262 - -
Viun3g06043 334 SUPERFAMILY Voltage-gated potassium channels 55 144 - -
Viun3g06043 334 ProSitePatterns EF-hand calcium-binding domain. 278 290 IPR018247 -
Viun3g06043 334 MobiDBLite consensus disorder prediction 1 41 - -
Viun3g06043 334 SUPERFAMILY EF-hand 275 330 IPR011992 -
Viun3g06043 334 Pfam Ion channel 60 139 IPR013099 -
Viun3g06043 334 Pfam Ion channel 180 252 IPR013099 -
Viun3g06043 334 SUPERFAMILY Voltage-gated potassium channels 167 268 - -
Viun3g06043 334 ProSitePatterns EF-hand calcium-binding domain. 317 329 IPR018247 -
Viun3g06043 334 Gene3D - 37 151 - -
Viun3g06043 334 Gene3D - 157 274 - -
Viun3g06043 334 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 43 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Viun3g06043 334 MobiDBLite consensus disorder prediction 17 41 - -
Viun3g06043 334 FunFam Calcium-activated outward-rectifying potassium channel 1 50 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06043 Viun-Chr3 64271591 64272757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06043 32 329 Ion Channels AT5G55630 56.040 9.55e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06043 K05389 - gmx:100799492 518.464