Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06030 ATGATGGCTGAATCTGATAACGAGTCAGGAGGAGGAAAGAATGAATCTTCAATTTGCAGAGAGCAAGACAGGCTCCTTCCCATAGCCAACGTGGGAAGGATCATGAAGAAGGTGTTACCGGGCAACGCTAAGATTTCCAAAGAATCAAAAGAAACCATGCAAGAGTGTGTGTCAGAGTTCATCAGTTTTGTAACAGGAGAGGCTTCTGATAAGTGTCAGAAAGAGAAAAGAAAAACCATCAACGGTGATGATCTTCTGTGGGCCATGGCCTCACTTGGCTTTGAAGATTATGCAGAGCCCCTCAAAGCTTATCTGCACAAGTACAGGGAGATGGAAGGGGAAAAAACTGCTATGATTGGGAAGCACCATGGCCTTTATGCAAATCCACTGTGA 393 0.4478 MMAESDNESGGGKNESSICREQDRLLPIANVGRIMKKVLPGNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMASLGFEDYAEPLKAYLHKYREMEGEKTAMIGKHHGLYANPL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06030 130 Gene3D Histone, subunit A 12 125 IPR009072 GO:0046982
Viun3g06030 130 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g06030 130 FunFam Nuclear transcription factor Y subunit B-3 14 128 - -
Viun3g06030 130 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Viun3g06030 130 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Viun3g06030 130 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Viun3g06030 130 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun3g06030 130 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun3g06030 130 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Viun3g06030 130 SUPERFAMILY Histone-fold 22 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06030 Viun-Chr3 64189629 64190376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06030 2 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.410 8.08e-66 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g06030 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06030 K08065 - gmx:100305641 211.075