Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06026 ATGAACGTGAGGCAGCAGGCATCAGGAGAGAACAGCAGCAACAACAACAACCACTCTGCTGATGAGACCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATTAGGATCATGCGGAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAGACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTCATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGACTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGAGGTGAATCGCTGGGGAAGAGGACCATTGAATACGCCCCTATGGGTGTTGGGGTTCCCACTGCTTTTGTGCCTCCACAGTTTCACCCCAATGGATACTATGGTGCTGCAATGGGGACTTACGTTGCGCCACCCAACGCTGCGTCCTCTCATCACCATGGAATGCCAAGTACTGAACCGAATTCTCGCTCCATGTGA 579 0.5164 MNVRQQASGENSSNNNNHSADETNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVPTAFVPPQFHPNGYYGAAMGTYVAPPNAASSHHHGMPSTEPNSRSM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06026 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun3g06026 192 Gene3D Histone, subunit A 5 139 IPR009072 GO:0046982
Viun3g06026 192 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Viun3g06026 192 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Viun3g06026 192 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Viun3g06026 192 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g06026 192 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g06026 192 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun3g06026 192 FunFam Nuclear transcription factor Y subunit B-6 23 139 - -
Viun3g06026 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Viun3g06026 192 SUPERFAMILY Histone-fold 31 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06026 Viun-Chr3 64177675 64178784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06026 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.088 1.88e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g06026 CBFD_NFYB_HMF 4.7e-26 CL0012