Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06025 ATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGGTTGAAGCCGTCAGTGCCAGACATGAACGTGAGGCAGCAGGCATCAGGAGAGAACAGCAGCAACAACAACAACCACTCTGCTGATGAGACCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATTAGGATCATGCGGAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAGACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTCATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGACTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGAGGTGAATCGCTGGGGAAGAGGACCATTGAATACGCCCCTATGGGTGTTGGGGTTCCCACTGCTTTTGTGCCTCCACAGTTTCACCCCAATGGATACTATGGTGCTGCAATGGGGACTTACGTTGCGCCACCCAACGCTGCGTCCTCTCATCACCATGGAATGCCAAGTACTGAACCGAATTCTCGCTCCATGTGA 660 0.5212 MENGGFHGYRKLPNTTNSAGLKPSVPDMNVRQQASGENSSNNNNHSADETNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVPTAFVPPQFHPNGYYGAAMGTYVAPPNAASSHHHGMPSTEPNSRSM 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06025 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 190 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun3g06025 219 FunFam Nuclear transcription factor Y subunit B-6 50 166 - -
Viun3g06025 219 MobiDBLite consensus disorder prediction 10 49 - -
Viun3g06025 219 SUPERFAMILY Histone-fold 58 156 IPR009072 GO:0046982
Viun3g06025 219 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Viun3g06025 219 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Viun3g06025 219 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Viun3g06025 219 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun3g06025 219 Gene3D Histone, subunit A 49 166 IPR009072 GO:0046982
Viun3g06025 219 MobiDBLite consensus disorder prediction 1 56 - -
Viun3g06025 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06025 Viun-Chr3 64177675 64179959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06025 1 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 74.026 4.65e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g06025 CBFD_NFYB_HMF 6.1e-26 CL0012