Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06020 ATGGATGAACAATTGAGGTTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGATTAGTGATCCGGGATTTCAAGAGCAGTGACCCTTATGTTGTTGTCAAGCTGGGGAATCAGACAGCAAAGACCAGGGTCATCCATTGTTCCTTGAATCCTGTTTGGAATGAAGAGCTGAGTTTCACTCTGACCGAACCTTTTGGACTTCTGAATTTGGAAGTGTTTGACAAAGATTTTCTGAAGGCTGATGACAAGATGGGGAATAGTTATCTGAATCTTCAACCATTGATGTCTGCATCAAGACTAAGAGATATTTTAAAGGTGTCCTCTGCCTCTGGTGAGACAACATTGAGGAAGGTGACACCTGACACTGAAAATTGTCTTGCTCGTGAAAGCAGTATCAGTTGTGTTAATGGTGAAGTGGTACAAAATGTTTGGTTAAGGCTTCGTGGGGTTGAGTCTGGGGAGCTACAATTGACCATCAAGTTGATCACTTCCTCAAATTAA 498 0.4177 MDEQLRLLKVIVVQGKRLVIRDFKSSDPYVVVKLGNQTAKTRVIHCSLNPVWNEELSFTLTEPFGLLNLEVFDKDFLKADDKMGNSYLNLQPLMSASRLRDILKVSSASGETTLRKVTPDTENCLARESSISCVNGEVVQNVWLRLRGVESGELQLTIKLITSSN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06020 165 CDD C2_ArfGAP 7 152 - -
Viun3g06020 165 Pfam C2 domain 8 100 IPR000008 -
Viun3g06020 165 Gene3D C2 domain 5 165 IPR035892 -
Viun3g06020 165 SMART C2_3c 7 102 IPR000008 -
Viun3g06020 165 PRINTS C2 domain signature 46 59 IPR000008 -
Viun3g06020 165 PRINTS C2 domain signature 67 75 IPR000008 -
Viun3g06020 165 PRINTS C2 domain signature 22 34 IPR000008 -
Viun3g06020 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 162 IPR044562 -
Viun3g06020 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 161 IPR035892 -
Viun3g06020 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06020 Viun-Chr3 64149040 64150771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06020 1 161 C2H2 Transcription Factor Family AT4G21160 39.130 1.35e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06020 - - pvu:PHAVU_003G087500g 301.597