Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05949 ATGTGGGAAAGAATATTAGTAGTTCTGCTGATTGTTTTGAATTATGTGTTGGTTGCAAAAGGAGAAACAAATGATGTGGATTTTAGCACACTAAAGTCTCTTACGAGTACCTGGAAGAACACCCCTCCAGAGTGGGAGGGTTCAGATCCTTGTGATGATTGGGAAGGAATCAAGTGCAAGAATACACGTGTTACATCAATAACACTAGCAAGTACTGGTTTGGGTGGTCAGCTTTCTGGAGATATTGGATCACTGTCTGAATTGGAGATTTTGGATCTATCTTACAACAAGGACATGACTGGACCACTTCCACAATCCATCGGGGATTTGAGGAAGCTGACAACCTTAATTCTCGTTAGCTGCAGCTTCAGTGGTCCTATTCCAGACAGCATAGGAAATATGCAGGAGCTCCTGTTTTTGTCTTTAAATTCCAATGGCTTTAGTGGAGTGATTCCGAATTCTATAGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCAGACAATCAACTTGAAGGGAGCATCCCGGTATCTGGTGATGACCCATTTGGTCTTGATAAGTTACACCATGCCAAACATTTTCATCTTGGGAAGAATAATCTCTCAGGCACCATCCCTCCTGGACTTTTTAGCCCGGAAATGGCTCTCATTCATTTGCTTTTGGAAAGCAATAAACTCGAAGGCAAAATTCCAGCTACACTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGCTTAGATAGTAACTCATTGGATGGACCTGTGCCTTCAAACATCAACAATCTTACAAATGTTCGAGATCTGTACTTGTCCAACAATAAACTTTCAGGCTCCCTGCCAGACCTTACTGGAATGAATGCCCTCAACTACCTGGACATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGAATGGTTTTCTACTCTCAAGTCCTTAGTAACATTAGAGATGGAGCGAACACAACTTCAAGGACAGGTTCCCTCTTCTTTGTTTGAACTTGTCAATTTACAGACTGTGGTGCTAAAAGACAACAAGATAAATGGAACCTTGGATGTTGGCTCCTCCAACAGCAGCCGGCTGCGACTTATTGATTTGGAGACAAATTCAATCGACAACATTAAGCAAAATGAAGTTTCAGGTGTCAGGATAATACTCAAAGATAACCCAGTTTGCCAAGAAACTAATGAACGAGGGACATATTGCTCCTCTTCTCAATCCAATTTCTCGTATTCAACACAACCAAATAACTGTGAACCTGATGCCTGCAGTTCCGAACAGACTTCGAGTCCCAACTGTAAATGCGCATATCCATATACAGGAACCTTAGCTTTCAGGTCACCTTCCTTTTCGGACTTGGATAACATAACACACTACTCAATGCTTGAGGATTCTCTTATGCGGTCTTTTAAGTCACATTTTGTACCTGTGGATTCGGTCTTGTTGAGCCATCCAAGTATTGATTCAACTGGGTATCTCAAATTGAGCTTACAAGTCTTCCCATCAGGACTAGATTATTTCAATCGAACTGGGACTTCAACAATTGGTTTTATGCTAAGCAACCAGACTTTTAAGCCTCCACAGCCGGATTTTGGACCATTTTTTTTTCTTGCAGATGGATATGAACACTTTGGGAACCATGAAGGATTGAGTGAATCGGGTAAACATTCAAACATTGGAATCATAATTGGGGCTGCAGTTGGTGGTTTGGTCTTGCTAGTGTTATTACTCTTAGCTGGTCTTTATGCTTTCCGCCAGAAGAAAAGGGCCGAAAAAGCGATTGGACAAAGCAATCCTTTTAAACGCTGGGATACGGTTGATAGCAAGAGTGATGTCCCTCAGTTGAAAGAAGCAAGAATGTTTTCTTTTGAAGACCTTAAAAAGTACACCAAAAGTTTTTCTCAAGTCAATGACATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCGATGGAAACGTGGTAGCAATAAAAAGAGCTCAAAAAGAATCTATGCAGGGAAAGCTCGAGTTTAAAGCGGAGATTGAACTTCTATCAAGGGTTCACCACAAGAATCTTGTCAGCCTTTTGGGCTTCTGCTTTGACCAAGGAGAGCAAATGCTGGTTTATGAGTATCTTAAAAATGGTAGTTTAAAGGACGCTCTATCAGGGAAGTCAGGGATTAAGCTAGATTGGATTAGAAGGCTAAAAATAGCCCTTGGTACTGCCCGTGGTCTTGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATAAAATCAAACAATATTTTGCTGGATAACCGCCTAAATGCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCTATGGTAGATGCAGAAAAGGATCATGTTACCACCCAAGTTAAAGGAACACTGGGTTACCTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGCTGGAGCTGATATCTGCAAGAAAGCCATTGGAACGAGGGAAGTATATAGTGAAAGAGATTAGGAATGCTGTGGATAAGACAAAAGGCTTATACGGTCTTCATGAATTTATTGATCCAGCCATGGGAGTGTCGTCCACAACACTGATAGGTTTTGACAAGTTTGTGAATTTGACCCTGAAATGTGTTGAAGAGTCAGGTGAAGAAAGGCCTAAAATGAGTGATGTGGTAAGAGAAATTGAGAACATATTGAAGTCAGCTGGTGCAAACCCTACTGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAAGTAAGCAGAGGAAGTTCCAGCCATCCTTATAACAGCAACGACACCTTTGATAATGTAAGTGCAGGGTCTCCATACACAAAAGTTGACCCTAATTAA 2874 0.4127 MWERILVVLLIVLNYVLVAKGETNDVDFSTLKSLTSTWKNTPPEWEGSDPCDDWEGIKCKNTRVTSITLASTGLGGQLSGDIGSLSELEILDLSYNKDMTGPLPQSIGDLRKLTTLILVSCSFSGPIPDSIGNMQELLFLSLNSNGFSGVIPNSIGNLSKLYWLDLADNQLEGSIPVSGDDPFGLDKLHHAKHFHLGKNNLSGTIPPGLFSPEMALIHLLLESNKLEGKIPATLGLVQSLEVVRLDSNSLDGPVPSNINNLTNVRDLYLSNNKLSGSLPDLTGMNALNYLDMSNNSFKPLDFPEWFSTLKSLVTLEMERTQLQGQVPSSLFELVNLQTVVLKDNKINGTLDVGSSNSSRLRLIDLETNSIDNIKQNEVSGVRIILKDNPVCQETNERGTYCSSSQSNFSYSTQPNNCEPDACSSEQTSSPNCKCAYPYTGTLAFRSPSFSDLDNITHYSMLEDSLMRSFKSHFVPVDSVLLSHPSIDSTGYLKLSLQVFPSGLDYFNRTGTSTIGFMLSNQTFKPPQPDFGPFFFLADGYEHFGNHEGLSESGKHSNIGIIIGAAVGGLVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFKRWDTVDSKSDVPQLKEARMFSFEDLKKYTKSFSQVNDIGSGGFGKVYKGTLPDGNVVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFDQGEQMLVYEYLKNGSLKDALSGKSGIKLDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDNRLNAKVSDFGLSKSMVDAEKDHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARKPLERGKYIVKEIRNAVDKTKGLYGLHEFIDPAMGVSSTTLIGFDKFVNLTLKCVEESGEERPKMSDVVREIENILKSAGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDNVSAGSPYTKVDPN 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05949 957 Gene3D Phosphorylase Kinase; domain 1 603 707 - -
Viun3g05949 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Viun3g05949 957 FunFam Leucine-rich repeat protein kinase family protein 598 707 - -
Viun3g05949 957 Gene3D Transferase(Phosphotransferase) domain 1 708 927 - -
Viun3g05949 957 Pfam Protein tyrosine and serine/threonine kinase 635 901 IPR001245 GO:0004672|GO:0006468
Viun3g05949 957 Gene3D Ribonuclease Inhibitor 279 432 IPR032675 -
Viun3g05949 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 708 918 - -
Viun3g05949 957 Pfam Leucine rich repeat 239 296 IPR001611 GO:0005515
Viun3g05949 957 PANTHER RECEPTOR-LIKE PROTEIN 55 32 906 - -
Viun3g05949 957 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Viun3g05949 957 SMART serkin_6 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05949 957 MobiDBLite consensus disorder prediction 910 951 - -
Viun3g05949 957 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524
Viun3g05949 957 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Viun3g05949 957 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Viun3g05949 957 ProSiteProfiles Protein kinase domain profile. 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05949 957 SUPERFAMILY L domain-like 58 389 - -
Viun3g05949 957 MobiDBLite consensus disorder prediction 906 957 - -
Viun3g05949 957 FunFam Leucine-rich repeat family protein 26 180 - -
Viun3g05949 957 SUPERFAMILY Protein kinase-like (PK-like) 618 937 IPR011009 -
Viun3g05949 957 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Viun3g05949 957 CDD STKc_IRAK 638 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05949 Viun-Chr3 63948575 63954386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05949 1 956 Receptor kinase-like Gene Family AT5G49760 55.671 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun3g05949 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05949 - - gmx:100811702 1510.74