Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05943 ATGGCAATTGCAGCCGCAAACTCATCACCCACCATGAGTCTCAGCCAGAGCCAGAGCCAGGAGGACGTCACCACCGCCTCCACCACCAACGACAACACCAACAACAGTAACAACAACAACACCACCACCGATAACAAGCCCGATGATCACGAGCATGACATGGTTATGCCCGGTTTTCGCTTCCACCCAACCGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCGGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCCACAGGAGCTGATAGGATGATCCGTACCGAGAATTTTCGCTCCATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACACGAAACCGAACGATATCAAAAGGCTGAGATATCGCTGTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCGACAAGGCCATCTTCATCAAGAGCTTCTTCGCACTCCGAAACCAAGAAACACAACGAGATGGTTCATCACAACATGGGATTCGTGGGGCAATCGAAGCCAACCGAACACATAGTTGAGAAAATGAACGAAACGGAAGCAAGCAGTGATGTGAACACGGCTCTTGGACTTTCCAAATACAATGCTTACCGTGCTGCGATGGGTGCACTGAGCAGCACAATGGCACTTCCGGTTGTTCCGATGGACGAGGAAGGGTTGATGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCAGCGGCACACGCAGGTGTTTCTGGGATTGGCACAATCTTCTCTGCTGGACCTTCTAGTTCCAACAACAATGGAATCGTGAACATGGATGATCTTAATAGGCTAATGAGTTACCAGCAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTCTGCTGATGCAACCATCACCGGTAGTGTCTCTCACCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTCTGGGAGTGGAATCCAATCCCAGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1239 0.502 MAIAAANSSPTMSLSQSQSQEDVTTASTTNDNTNNSNNNNTTTDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNEMVHHNMGFVGQSKPTEHIVEKMNETEASSDVNTALGLSKYNAYRAAMGALSSTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGVSGIGTIFSAGPSSSNNNGIVNMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLTSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05943 412 Pfam No apical meristem (NAM) protein 57 181 IPR003441 GO:0003677|GO:0006355
Viun3g05943 412 SUPERFAMILY NAC domain 55 201 IPR036093 GO:0003677|GO:0006355
Viun3g05943 412 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 52 289 - -
Viun3g05943 412 MobiDBLite consensus disorder prediction 1 43 - -
Viun3g05943 412 ProSiteProfiles NAC domain profile. 55 202 IPR003441 GO:0003677|GO:0006355
Viun3g05943 412 MobiDBLite consensus disorder prediction 208 231 - -
Viun3g05943 412 FunFam NAC domain-containing protein 35 64 205 - -
Viun3g05943 412 Gene3D NAC domain 64 205 IPR036093 GO:0003677|GO:0006355
Viun3g05943 412 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05943 Viun-Chr3 63907468 63910090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05943 54 228 NAC Transcription Factor Family AT2G02450 88.000 3.86e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g05943 NAM 4.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05943 - - vum:124824712 711.835