Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05936 ATGTCAGAAATGCGGGTGTCCGAGCTTCACTTGAAGAAGGAACTCACCCAAATACGCAAGGCTGCGCGAGTTCTCAGAGATCCTGGCACCACATCTTCGTGGAAGTCACCACTCAGCTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGTTCAGCACCAATTCTCAACTTGCTAACAATGACAAAGAGAAAGAGAAGGAGCGGGAGAAAAAGGTGTTTTTGTACAATTGGAAAAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGATGACGATGATGGTGATGATGGGGGGTCGTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAACGGTTGCGACTCTAAGAGTGATACATACCTGGCTGCTGGTGGTACCGGTGGCGGTGGTGGGACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACTGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTTGATTTTTTGGCAAAGTATCAACAGCATAGACAAACGAATCCAGGGAGAAATTTTGTGAGTTCTTCGAAGGCAATGCTCGAGGGGCATTCTTCTTTGCCTTTCTTTAGCAGAGACGACTCTGTCGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCGATTTCGGGGGCTTCCCCTTTGCTTTTCAAACTCAGGCAAAAGAATTGGTCTCGCTCTTCCTCGAAGTTTCTGAGAAGAAGTCGAAAAGAGGATTCTTCGTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATCCGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGGATTCCTTGCTATTGGTCCAAGAGGACTCCTAAGCATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCCAGACACCGGAGATCGGTTTCGGCATCTCAAAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGATGCAAGAGAAGGGTCGTCTGTGGGAACCGGAAGGAGCGATGATGAACTTTCCACAAACTTTGGAGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCAGCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGAGGAGGGCACGCCGGAGAATAGTCGCTGTTTCAGCCAAAAGTATAGACCAATGTTCTTCGGCGAACTTATTGGCCAGAATATTGTTGTTCAGTCACTCATCAATGCTGTTTCCAGGGGACGCATAGCTCCTGTCTATCTTTTTCAGGGTCCACGTGGGACTGGCAAAACTTCAACTGCTAGGATATTTGCTGCTGCATTGAACTGTGCTAGTCCTGATGAGAATAAACCTTGTGGCTACTGCACGGAATGCACTGATCTCATTTCTGGTAAGAGCAGTGATCTTTTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTAAAAAGATTGTCAACAGGGTCATCGTCAGCCTCACCACAATATACAGTTTTGGTTATTGATGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTCAAGTTCCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGGACGATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGATCTCTTCGAGATGCAGAAACCATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTGTTAGAACTTTTGGAGTTGGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCTAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCGTTGACACCAGACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGAACATCCAGTGAACGTTGTACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCTACACCTTCTCCTGATTTCACGCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATGTTACCTCTGGCACGCACAAGTCAGACCCTCAGTATGTGCCTCGAAAGTCACCTTTCTCTGGATCCCAGCAAAAGGCAGTAAATGATGATTCCAACCATCAAAAGGATTCAAAGATTGAAGCTTTCGGCTTGAAATCGAAGCCGTCAAACAGTCCAATCCTAGATGATGGCTCCACAGTTGTATCATCTGATGATCTTATGGTGGGGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAAGTGTCACTCTAAGACATTGAGGCAGCTGCTGCACCATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATATTGCTTTTGGCGACGCAGATATTAAAGTTCGGGCTGAGAGGTTTTTAAGAAGCATCACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCCGAATAATCCACTTGGCAGGTGGGGAAGGTGAAAACCAGGTTAATCTAACAGGAGTAAAGCAGGGTGAGTCAATAGTGGGTAGTGAGAAGGAACAAAGACAAGGTCATGTGAAGGGAACAGAATCTTATTCTAGTTTGCCTCCTTTACTGGATAGAAACCTTCAATCTAGAACTGCTTCATCAGATATCTTGGGTGAAGGAAATGGTGGGAGGGAAAGGAGACAGGATAATCCAATGCACAGAATTGAATCCATCATTCGTGAGCAAAGGCTTGAAACTGCGTGGTTACAGGCTGTAGAGAAAGGTTCCCCTGGATCATTAAGTCGTTTGAGACCCGAAAAGAATCAAGTACTGCCACAGAATGGTGCAGACCCAATGGAGTCCATGGAGTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGAACCCAATAATGAACTCAAAGTTTTGAGCCTTAAAAATGGAAGGGTCCCTCAGAAGGACCAGACTGGTAGAAAGACAGATCGGTATCCCATGTCCCCAAGTTTATTGCATGACACCAGTTTAGCCACAATTTCTGGAAAAGACCATCCGGGATATGAATCGGGGTCAGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCGAAACCGAGAAGGGTGAAAGGTGGCACCCCAGTTAGAGCGCGCAGAGGGGCAAGTTTTGCGTTGTTTGGTGACTGTGGGAAGACGAAGAAAAGGGAGCGGAAAAGATAA 3732 0.4523 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTNSQLANNDKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQQHRQTNPGRNFVSSSKAMLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGASPLLFKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNPYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSASCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDENKPCGYCTECTDLISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTVLVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDFTQSSSSRRQSCKTTEDDPSSVSRDVTSGTHKSDPQYVPRKSPFSGSQQKAVNDDSNHQKDSKIEAFGLKSKPSNSPILDDGSTVVSSDDLMVGNTMYRCIDSGKLCDIWVHCIEKCHSKTLRQLLHHHGKLVSVCEVEGVLVAYIAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLAGGEGENQVNLTGVKQGESIVGSEKEQRQGHVKGTESYSSLPPLLDRNLQSRTASSDILGEGNGGRERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGADPMESMESTRFSSHQHWEDEPNNELKVLSLKNGRVPQKDQTGRKTDRYPMSPSLLHDTSLATISGKDHPGYESGSGAGGCGFLCWNKSKPRRVKGGTPVRARRGASFALFGDCGKTKKRERKR 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05936 1243 MobiDBLite consensus disorder prediction 25 73 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 106 123 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 370 415 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 396 413 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 1099 1125 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 840 872 - -
Viun3g05936 1243 Coils Coil 771 801 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 88 147 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 815 829 - -
Viun3g05936 1243 Pfam DNA polymerase III subunits gamma and tau domain III 692 805 IPR022754 GO:0003887
Viun3g05936 1243 MobiDBLite consensus disorder prediction 29 63 - -
Viun3g05936 1243 Gene3D - 640 701 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 1106 1125 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 1022 1077 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 1154 1173 - -
Viun3g05936 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 685 IPR027417 -
Viun3g05936 1243 NCBIfam DNA polymerase III subunit gamma/tau 463 812 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Viun3g05936 1243 SUPERFAMILY post-AAA+ oligomerization domain-like 709 810 IPR008921 GO:0003677|GO:0006260
Viun3g05936 1243 FunFam DNA polymerase III subunit gamma/tau 639 701 - -
Viun3g05936 1243 Gene3D - 455 636 IPR027417 -
Viun3g05936 1243 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 466 837 - -
Viun3g05936 1243 CDD HLD_clamp_pol_III_gamma_tau 638 701 IPR045085 -
Viun3g05936 1243 FunFam DNA polymerase III subunit gamma/tau 459 637 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 1035 1060 - -
Viun3g05936 1243 Pfam DNA polymerase III, delta subunit 478 638 - -
Viun3g05936 1243 CDD AAA 477 635 - -
Viun3g05936 1243 MobiDBLite consensus disorder prediction 815 880 - -
Viun3g05936 1243 SMART AAA_5 495 645 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05936 Viun-Chr3 63870800 63877541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05936 459 753 Core DNA Replication Machinery Family AT1G21690 24.671 1.76e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05936 - - gmx:100814391 2071.2