Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05932 ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACGTATGGTGGGGGACACGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCACAGCCACAACCACATTATCTCCTCCACGGCGCCTACCAACGGCACACCCACTATGCAGCAGGAGGATCACGGGTACAAGAAAGTGGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACCGATGGATGCGGCGAGTTCATGCCCAGTGGGGAAGAAGGCACCATAGAGGCTCTGAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCATCTTCGTGTGACTACCACCCCTTCAACAGAAGAAGACTCATTCTGGGCCCTCACAAGAACCTCCTCCCCCCCGAGGCTCTTGGCTACCCTACAGGTAACATCCTCCCTTCTAGAAGCGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCGGAGTCCGATGAACAAGAAGACGGTGGGGGAATGGTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAGGGTTGGGTGGAAAATCCAGAAGCAAGAAGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTGAAGCGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAATCCTCCTACTGCAGCAGCTTAA 816 0.527 MELSSQEGEIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHSHNHIISSTAPTNGTPTMQQEDHGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRPSQLVKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05932 271 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Viun3g05932 271 SUPERFAMILY Homeodomain-like 195 263 IPR009057 -
Viun3g05932 271 Gene3D - 191 264 - -
Viun3g05932 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 261 - -
Viun3g05932 271 FunFam Zinc-finger homeodomain protein 2 192 263 - -
Viun3g05932 271 NCBIfam homeobox domain, ZF-HD class 202 258 IPR006455 -
Viun3g05932 271 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g05932 271 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Viun3g05932 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Viun3g05932 271 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05932 Viun-Chr3 63842538 63844379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05932 1 265 ZF-HD Transcription Factor Family AT1G14440 49.664 1.08e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g05932 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05932 - - gmx:100805652 449.129