Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05887 ATGACCTCCTCAGAGGCTATAGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTAATTGCACGGGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAATTCCTTTCAAAATCGACGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAGGCTGCTTTGAAAGAACATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGATGACTTCGTCTATAAAATTATAAACGTTGTTGACAAAGACGATGAAGACTTAAAAAAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGAAGTGTGACTATAGTTGTTGCATATCTGATGAGGACTCGTGGAATGAGTTTTTTTGAAGCTCTGCAACATGTAAGAAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACGTTAG 549 0.3953 MTSSEAIEQFDKCMNGQIEVIARVWHLFQAYKKDKIPFKIDEGLYLGSIGTAVNKAALKEHNITHILTVAGRIPPAHPDDFVYKIINVVDKDDEDLKKYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSFFEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASKSR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05887 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Viun3g05887 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Viun3g05887 182 FunFam Dual specificity phosphatase 12 38 182 - -
Viun3g05887 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Viun3g05887 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 35 176 - -
Viun3g05887 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 37 179 IPR029021 -
Viun3g05887 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Viun3g05887 182 Gene3D Protein tyrosine phosphatase superfamily 38 182 IPR029021 -
Viun3g05887 182 CDD DSP 37 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05887 Viun-Chr3 63707213 63710077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05887 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 1.45e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05887 - - gmx:100306342 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05887 3 63707213 63710077 Viun3g05887 3 63707213 63710077 ECH