Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05884 ATGGGTGTTTCATGGAGTAACAATAATAGAAGAAGAAGAAGAAGCGCCTACTTTCATCCTCATCCTCATCCTCATCCTCCACATCTTCCACCCCCTTACTATTACCCTCCGCCGCTTCTGCCACCAGCAGCACCACCTCCACAAGGTTACTTTGTCACCTCAACCAACCCTTCTGCTTCTACCTCTGCCACCACCGGCTATGTGGGTCCTCCTCCTCCTCAGTATTACCCAAATGTCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCCTTGTATGCAAATGAAGGGGGAAGCCAAATTCAAGTTTCGCCACCACCCTATGTTGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACGCTACGCCTCTGCATAGATCCTAACTATCCAGATCACCACTTGATTTCCTTTGATTTCGATGCCCTCTTTGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTAATCCACTATTTCCTGATTTGTTTGAGCCAATCACGTTCCCCCTTCGAAAAGGGGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTCGGTTTTTTTGAGTTGGATGATCTTTCTCAACCCTCATCCGGAGAAGATATATTTCCCCTTGTCATATGTGCTGAAACTAATAGTATTTCTGTACTGGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAACAATGGTGTTGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATCGATGATGTTCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGCAACAGCAGATTTTGAAGATAATGATCATGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTGCCCTGCCGACATATGTGCATGTGCAGTGAGTGTGCTAAAGCTTTGCGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATTGAGGAACTTATAGAGATCAGGATTAACAGTGGCAATCAATGA 1056 0.4384 MGVSWSNNNRRRRRSAYFHPHPHPHPPHLPPPYYYPPPLLPPAAPPPQGYFVTSTNPSASTSATTGYVGPPPPQYYPNVYTANSVMLHQQPLYANEGGSQIQVSPPPYVDHQTTKKIRNDVNLHKHTLRLCIDPNYPDHHLISFDFDALFDGSITIFYLAKEEEKCRFNPLFPDLFEPITFPLRKGAGQKFCQPSGTGIDLGFFELDDLSQPSSGEDIFPLVICAETNSISVLDASPHMQITQAVLEKNNGVGPFQVKVVRQILWIDDVRYELRELYGIGSSATADFEDNDHGKECVICMTEPKDTAVLPCRHMCMCSECAKALRFQSNKCPICRQPIEELIEIRINSGNQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05884 351 ProSiteProfiles Zinc finger RING-type profile. 296 335 IPR001841 -
Viun3g05884 351 SUPERFAMILY RING/U-box 295 341 - -
Viun3g05884 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 345 IPR013083 -
Viun3g05884 351 FunFam probable E3 ubiquitin-protein ligase LOG2 280 345 - -
Viun3g05884 351 PANTHER MAHOGUNIN 48 345 IPR045194 GO:0061630
Viun3g05884 351 Pfam Zinc finger, C3HC4 type (RING finger) 294 340 - -
Viun3g05884 351 SMART ring_2 296 334 IPR001841 -
Viun3g05884 351 CDD mRING-HC-C3HC5_MGRN1-like 294 335 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05884 Viun-Chr3 63686246 63688855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05884 108 351 C3H Transcription Factor Family AT3G06140 62.249 1.44e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05884 - - gmx:102665712 518.85