Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05878 ATGAACATGGTATCTGTGTCAGCGGTGTGCAAGGCGGTGGCGAGTTTCAACCCGGGACTCACGATGTCTCCGCTGACGTTGTTCAGGCAGCGGAACAAGGAAAAGGTTGTGGTCATAATGGGAGCGACGGGGACAGGAAAGTCAAAGCTTGGCATAGACCTTGCCACGCACTTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAGGTGTACGAAGGTCTCGACATCACCACCAACAAAGTCACGGAAGACGAGTGCCGAGGGGTCCCACACCATCTCCTAGGCACTGTCCAACCCAACATTGATTTCACTGCCGACGACTTCTGCCGCCACGCCACCCTCGCCGTCGCCTCCATTTTGAAACGCGACGGCTTGCCCATCATTGCCGGTGGTTCCAACTCTTTCCTCGACGCCCTGGTCAACCACTACCCTGACTTTCGGTTGCGCTACCACTGTCTGTTCCTCTGGGTCGACGTCTCCCTCCCGGTCCTCCACTCCTCTCTCGCCGCACGTGTGGATCGCATGATCCGAGCCGGCCAGGTCGACGAGGTTCGACCGTTTTTCCAATACCACAACCGCGACTACACCGTGGGCATTCGCAAGGCCATTGGCGTCCCCGAGTTTCATTCCTTTTTCCAGGCGGAAGCCGACGGCGCCGACGAGAGGACCAGGGAGAAGCTCCTCCAGGCTGCCATTGCCTCCATCAAAATCAACAACTGCAACCTCGCCACCCGACAGCTCCACAAGATCCACCGCCTCCACGCCATTTTCAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAGGAGCACTCCCCAAGAAGCTGAGCAAGCGTGGGAGGATCACGTGCTGTCCAAAAGCCGAAGGATTCTTCACAACTTCCTCTACGACGACGCGCATGTTGATGTTGCTCTTGCTTCTGTTATCGCTTCTTCTTCGCCGCCCATGGCCGCCGCCGCCGCCGCAACTCGCTAG 987 0.5805 MNMVSVSAVCKAVASFNPGLTMSPLTLFRQRNKEKVVVIMGATGTGKSKLGIDLATHFPPAEIVNSDKMQVYEGLDITTNKVTEDECRGVPHHLLGTVQPNIDFTADDFCRHATLAVASILKRDGLPIIAGGSNSFLDALVNHYPDFRLRYHCLFLWVDVSLPVLHSSLAARVDRMIRAGQVDEVRPFFQYHNRDYTVGIRKAIGVPEFHSFFQAEADGADERTREKLLQAAIASIKINNCNLATRQLHKIHRLHAIFKRNMHRLDATEVFLRSTPQEAEQAWEDHVLSKSRRILHNFLYDDAHVDVALASVIASSSPPMAAAAAATR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05878 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 262 - -
Viun3g05878 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 262 - -
Viun3g05878 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
Viun3g05878 328 Gene3D - 33 299 IPR027417 -
Viun3g05878 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 190 IPR027417 -
Viun3g05878 328 Pfam IPP transferase 70 146 - -
Viun3g05878 328 Pfam IPP transferase 150 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05878 Viun-Chr3 63632674 63634489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05878 150 299 C2H2 Transcription Factor Family AT2G27760 28.977 5.69e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05878 K10760 - gmx:100782474 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05878 3 63632674 63634489 Viun6g02352 6 28859774 28861648 PCT