Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05877 ATGGCTCAACAGGTATTACTGAATTCATGTCCACCTCAACATGTATCGCTTCAGCGGTTCAGAATTTTGAAGCCATCGATATGGGTCACGAAACCGAATATCGTTTCTTCACCATCAGTTTCTACCTCAGCTCCTCTTCGCTGCGTGTCGTTTTGCTGCAACTCTAGCGCTACCTCTTCCGTCGAATCCAATTTACCCTCTTCAGCCAAAATCTTCGTCAAAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGAGTAGTTAATCTCGTCCAGCTTCCAATAGATGAAGAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTATTTATGTTACAATTGCAAAGCCTGGACCATCAAACAATTCGAAGAGGACAACAGCCTACAAATTTTAA 486 0.4177 MAQQVLLNSCPPQHVSLQRFRILKPSIWVTKPNIVSSPSVSTSAPLRCVSFCCNSSATSSVESNLPSSAKIFVKGLPHSTSEGRLMKVFSEFGVVNLVQLPIDEESGKSLGFAFIWFVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGPSNNSKRTTAYKF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05877 161 SUPERFAMILY RNA-binding domain, RBD 61 152 IPR035979 GO:0003676
Viun3g05877 161 Gene3D - 53 159 IPR012677 -
Viun3g05877 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Viun3g05877 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Viun3g05877 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 154 - -
Viun3g05877 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05877 Viun-Chr3 63622240 63625157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05877 53 150 Eukaryotic Initiation Factors Gene Family AT3G11400 34.694 1.08e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05877 - - gmx:100791917 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05877 3 63622240 63625157 Viun3g05877 3 63622240 63625157 ECH