Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05876 ATGGCTCAACAGGTATTACTGAATTCATGTCCACCTCAACATGTATCGCTTCAGCGGTTCAGAATTTTGAAGCCATCGATATGGGTCACGAAACCGAATATCGTTTCTTCACCATCAGTTTCTACCTCAGCTCCTCTTCGCTGCGTGTCGTTTTGCTGCAACTCTAGCGCTACCTCTTCCGTCGAATCCAATTTACCCTCTTCAGCCAAAATCTTCGTCAAAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGAGTAGTTAATCTCGTCCAGCTTCCAATAGATGAAGAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGATTTATTTATGTTACAATTGCAAAGCCTGGACCATCAAACAATTCGAAGAGGACAACAGCCTACAAATTTTAATCATATGA 480 0.4167 MAQQVLLNSCPPQHVSLQRFRILKPSIWVTKPNIVSSPSVSTSAPLRCVSFCCNSSATSSVESNLPSSAKIFVKGLPHSTSEGRLMKVFSEFGVVNLVQLPIDEESGKSLGFAFIWFVKEESAQLAVQEMNGKIYLCYNCKAWTIKQFEEDNSLQILII 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05876 159 SMART rrm1_1 70 146 IPR000504 GO:0003723
Viun3g05876 159 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 133 - -
Viun3g05876 159 Gene3D - 40 138 IPR012677 -
Viun3g05876 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 135 IPR000504 GO:0003723
Viun3g05876 159 SUPERFAMILY RNA-binding domain, RBD 61 135 IPR035979 GO:0003676
Viun3g05876 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05876 Viun-Chr3 63622240 63625157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05876 26 135 Eukaryotic Initiation Factors Gene Family AT3G11400 29.060 9.57e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05876 - - ccaj:109808459 162.54