Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05847 ATGGCCTCTCCTCCACCACCCCCCGACCCTCCCTCCGCCGTCCCCCTAGCCCTCATCCCCCTTCCCCTCCCCGCGCCCCCCTCCTCCCGCCGCCTTCCTCCTCCCTGCTGGTCACCCGATGAAACCCTCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAAGAGGTCGCCGACGCCGTCGCAAACCGCTGCCCCAACGCCTCCCCTCCCAAAACCCCCGTCCAGTGCCGCCACAAAATGGAGAAGCTCCGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAACTCCTCCTGGGTCCACTTCAAGCTCATGGACTCCATGGAGAAAGGTCCCTCTCCTGTCAAACCCGAACACGATTCCGATAGTGACAACGATGATGACGAAAACGAGGACGATCAAGATCTGTACCAGGAGATCAACCACAACGGCCACACTCGGAGCTTGAACAAGTTGTACAGGAATGGGTTTCCGGGCTCCGGTGGTGCCGGTGGATTTAGGATTCGAATTCCCACCGGGATGTCCCCTGCTCAACCCGGGTCTGGCTCCAGGATGTTTGGGAAGGTTGGGAATCAGAAATTCAGCCCTAATTTGAATCAAAACCCTAACCCTAATTCTAATTTTGGGAAGAAGAGAGAGAGAGACCCGGTTGGGGAGGTGGTGGCTGCGATTAAGGTTTTAGGCGATGGATTTGTGAGGATGGAACAGATGAAGATGGAGATGGCGAGGGAGATTGAAAGCATGCGCATGGAGATGGAAATGAAGCGCACTGAGATGATTCTGGAGTCACAACAACGGATTGTTGAGGCCTTTGCCAAGGCAGTTTCAGAAAAGAAGAAGGCCAAGACTGTGTCTTCCCCTCAGCAGCCCTAA 933 0.5734 MASPPPPPDPPSAVPLALIPLPLPAPPSSRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVANRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWVHFKLMDSMEKGPSPVKPEHDSDSDNDDDENEDDQDLYQEINHNGHTRSLNKLYRNGFPGSGGAGGFRIRIPTGMSPAQPGSGSRMFGKVGNQKFSPNLNQNPNPNSNFGKKRERDPVGEVVAAIKVLGDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKAKTVSSPQQP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05847 310 Coils Coil 258 278 - -
Viun3g05847 310 ProSiteProfiles Myb-like domain profile. 37 97 IPR001005 -
Viun3g05847 310 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 297 IPR044823 -
Viun3g05847 310 SMART 118neu2 44 133 IPR006578 -
Viun3g05847 310 Coils Coil 90 110 - -
Viun3g05847 310 Pfam Myb/SANT-like DNA-binding domain 35 128 IPR044822 -
Viun3g05847 310 Gene3D - 37 102 - -
Viun3g05847 310 MobiDBLite consensus disorder prediction 213 227 - -
Viun3g05847 310 FunFam Trihelix transcription factor ASIL2 37 102 - -
Viun3g05847 310 MobiDBLite consensus disorder prediction 213 233 - -
Viun3g05847 310 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05847 Viun-Chr3 63427357 63429090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05847 11 128 Trihelix Transcription Factor Family AT3G14180 33.600 2.63e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun3g05847 Myb_DNA-bind_4 2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05847 - - vun:114179736 521.931