Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05838 ATGGGTTGTGTCCATGGCAAGTGTTGCTGTGGCGAGCATAATTCATCAGAGGATGGTTCTAGGGATTACCGAGAAACTGGCTTCGTCCGTAGCCACAGGAAAAACATACTCGCTCAGAGGTCACTGAAGCGTGCTCCTGTTCCTTCTCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGATACTACCCGGACTCACCTGATAAAGAAAACCAAGATAGTTTTTGCATCAGTACAAATCTCCAAGGTAACCCCAATGTTCATTTCTTTGGCGTCTATGATGGGCATGGTCAGTATGGTAGCAAGTGTTCAAATTTTGTTAAGGATAGGCTGATAGAGAAGTTGGTAAATGACCCTGCATTGTTGGAGGATCCCGTCCAAGCTTACAATTCTGCATTTTTGGCAACGAACCAAGAATTACGTAGTAGTAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATAACGGTGCTTGTTATTGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTGCTGGCTGTTAAGGATGGGAACCGCATTGTCGCGGAGGACTTGTCCTCTGATCAGACGCCGTTTAGGAAAGATGAATATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCTCAAGGATCCAGATATCCAGAGTTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCTCCCAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCTTTTACGAGGAGTATAGGGGATAGTTTAGCAGAGACAATTGGTGTCACTGCTCTTCCTGAGGTGAAAACTTTTAAGCTTACACCTGATCATCTTTTCTTTGTGGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGCCAAACTGTTGTTGATATGGCAGCAAGCTATATGGATCCTCGTGATGCATGTGCAGCTATTGCAGAAAAGTCATACAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATTATCCTTGTTCAGATCAAAGGTCTCTCTAATTCCGGTACATTTGGAGTTGGATCAAATGAGACAAATGTTGGCGCTGTACTGAATTCCAGGGCAGGAACTCCTGAGATACCTGCTGCGCATGAATCTGATGTTCATCGTTCTGTCAGAACCAGTTTCTCAGAGTTGCACTCTGCTCAGCCTGCGGCTTCAGTGATCAGCCCGGCCGTAGAGGCTCACTCTGCAGCATATCCAAGACCAATTGAATGA 1269 0.4571 MGCVHGKCCCGEHNSSEDGSRDYRETGFVRSHRKNILAQRSLKRAPVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCISTNLQGNPNVHFFGVYDGHGQYGSKCSNFVKDRLIEKLVNDPALLEDPVQAYNSAFLATNQELRSSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRKDEYERVKLCGARVLSVDQVEGLKDPDIQSWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVTALPEVKTFKLTPDHLFFVVASDGIFEFLTSQTVVDMAASYMDPRDACAAIAEKSYKLWLELENRTDDITIILVQIKGLSNSGTFGVGSNETNVGAVLNSRAGTPEIPAAHESDVHRSVRTSFSELHSAQPAASVISPAVEAHSAAYPRPIE 422
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05838 422 PANTHER PROTEIN PHOSPHATASE 73 345 IPR015655 GO:0004722|GO:0006470
Viun3g05838 422 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Viun3g05838 422 SMART PP2C_4 51 344 IPR001932 -
Viun3g05838 422 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 348 - -
Viun3g05838 422 Gene3D - 53 348 IPR036457 -
Viun3g05838 422 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Viun3g05838 422 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Viun3g05838 422 CDD PP2Cc 71 346 IPR001932 -
Viun3g05838 422 Pfam Protein phosphatase 2C 73 324 IPR001932 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun3g05838 Viun-Chr3 63366803 63370300 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05838 1 351 PP2C-type Phosphatase Gene Family AT3G06270 69.688 1.38e-175 492
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05838 - - gmx:100797866 737.643
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05838 3 63366803 63370300 Viun3g05838 3 63366803 63370300 ECH
Viun3g05838 3 63366803 63370300 Viun6g02407 6 29280604 29284011 PCT