Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05817 ATGGGCAGGTATCGAAGCCGGAGCAGAAGCTATAGTCCTCGGCGACGAAGCAGAAGCCCGCTGCCACCGCCGTCGCGTGGTCGTAAGCGCTACGTCGACGATCGCTACGGTGATAGCAGGTCATACAGGGACCGCCGCTCACCTCTTCCTTCCGGTTTACTCGTTCGCAATCTTCCCCTCGATGCCAGGCCTGAGGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCCAAAAATTATTACACTGGTGAACCACGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACATCTTAATCATACTATCATTGGTGGACGCGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTCTTAGTTCTCGAGGAAGTTCCCGATATGGGGGTGGTAGAAGGAGAAATCGATCTAGGTCCCCACAACGCCGATACCGCTCCTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGGGATGACAGAGGTAGGGATGATTATTATTCTCCGGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGGGAGAACGGTCGGAGTCCTGATGAAAAGAAGGGTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 753 0.5113 MGRYRSRSRSYSPRRRSRSPLPPPSRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGSSRYGGGRRRNRSRSPQRRYRSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRENGRSPDEKKGQTPSRSQSPRGNDRSPSRSRSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05817 250 SMART rrm1_1 52 125 IPR000504 GO:0003723
Viun3g05817 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 243 - -
Viun3g05817 250 MobiDBLite consensus disorder prediction 1 49 - -
Viun3g05817 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Viun3g05817 250 MobiDBLite consensus disorder prediction 168 191 - -
Viun3g05817 250 MobiDBLite consensus disorder prediction 206 223 - -
Viun3g05817 250 MobiDBLite consensus disorder prediction 148 162 - -
Viun3g05817 250 MobiDBLite consensus disorder prediction 224 250 - -
Viun3g05817 250 Gene3D - 24 169 IPR012677 -
Viun3g05817 250 MobiDBLite consensus disorder prediction 132 250 - -
Viun3g05817 250 MobiDBLite consensus disorder prediction 27 45 - -
Viun3g05817 250 SUPERFAMILY RNA-binding domain, RBD 53 157 IPR035979 GO:0003676
Viun3g05817 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05817 Viun-Chr3 63266715 63271361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05817 55 113 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.60e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05817 K12900 - gmx:100788749 261.536